Hb_009615_070

Information

Type -
Description -
Location Contig9615: 57506-63812
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00390g
description POPTRDRAFT_820157; type X protein phosphatase-II
nr
ID XP_002310919.1
description type X protein phosphatase-II [Populus trichocarpa]
swissprot
ID Q8LSN3
description Phytochrome-associated serine/threonine-protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1
trembl
ID A0A067GBP0
description Serine/threonine-protein phosphatase OS=Citrus sinensis GN=CISIN_1g022085mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description phytochrome-associated serine threonine-protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63729: 57488-63818 , PASA_asmbl_63730: 59979-60472
cDNA
(Sanger)
(ID:Location)		 039_G13.ab1: 60544-63818 , 052_F12.ab1: 59344-63751

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_070 0.0 - - type X protein phosphatase-II [Populus trichocarpa]
2 Hb_023278_020 0.0578886209 - - Peroxin 3 isoform 1 [Theobroma cacao]
3 Hb_003605_090 0.0609094015 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
4 Hb_007009_010 0.0616277061 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
5 Hb_004889_010 0.064773424 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
6 Hb_004899_370 0.0663459589 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
7 Hb_089032_030 0.0684090562 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
8 Hb_003414_050 0.0690457608 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
9 Hb_003349_090 0.0694486677 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
10 Hb_003697_040 0.0699457397 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
11 Hb_000805_240 0.0711122426 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
12 Hb_004102_110 0.0728041278 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
13 Hb_003671_020 0.0746113926 - - calcineurin B, putative [Ricinus communis]
14 Hb_000016_160 0.0788233081 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
15 Hb_002007_210 0.0790508963 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
16 Hb_001057_040 0.0798977994 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_000477_060 0.0799649958 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
18 Hb_004143_150 0.0805006966 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
19 Hb_024439_010 0.0820633626 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_010812_120 0.082198729 - - hypothetical protein JCGZ_03293 [Jatropha curcas]

Gene co-expression network

sample Hb_009615_070 Hb_009615_070 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_023278_020--Hb_004899_370 Hb_004143_150 Hb_004143_150 Hb_023278_020--Hb_004143_150 Hb_004127_020 Hb_004127_020 Hb_023278_020--Hb_004127_020 Hb_000001_060 Hb_000001_060 Hb_023278_020--Hb_000001_060 Hb_023278_020--Hb_004889_010 Hb_003697_040 Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_000336_240 Hb_000336_240 Hb_007009_010--Hb_000336_240 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_003414_050 Hb_003414_050 Hb_007009_010--Hb_003414_050 Hb_010883_050 Hb_010883_050 Hb_007009_010--Hb_010883_050 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_004889_010--Hb_003697_040 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_004889_010--Hb_089032_030 Hb_004899_370--Hb_004143_150 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004899_370--Hb_004127_020 Hb_010812_120 Hb_010812_120 Hb_089032_030--Hb_010812_120 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_089032_030--Hb_003349_090 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8255 30.9301 33.242 61.8042 24.2812 51.5326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.823 96.6237 72.5177 34.5221 35.612

CAGE analysis