Hb_009615_140

Information

Type -
Description -
Location Contig9615: 120273-124273
Sequence    

Annotation

kegg
ID pxb:103943279
description alpha-galactosidase-like
nr
ID XP_009350910.1
description PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
swissprot
ID A7XZT2
description Probable alpha-galactosidase B OS=Talaromyces emersonii PE=3 SV=1
trembl
ID M4CP50
description Alpha-galactosidase OS=Brassica rapa subsp. pekinensis GN=Bra005988 PE=3 SV=1
Gene Ontology
ID GO:0005618
description alpha-galactosidase alpha-n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_140 0.0 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
2 Hb_126871_010 0.0003139569 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
3 Hb_000172_040 0.0007396889 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
4 Hb_039046_010 0.0016464659 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
5 Hb_006111_050 0.0028205785 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
6 Hb_004324_180 0.0068650299 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004881_090 0.0070939914 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
8 Hb_008895_010 0.0082074907 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000834_120 0.0095749897 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
10 Hb_000373_090 0.010960311 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
11 Hb_003486_040 0.0113003983 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
12 Hb_000049_320 0.0122456502 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
13 Hb_176760_010 0.0165649809 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
14 Hb_008686_050 0.0170527322 - - -
15 Hb_007058_020 0.0237897974 - - -
16 Hb_001926_060 0.0247685887 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
17 Hb_163180_010 0.0258718411 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_003914_040 0.0291470867 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
19 Hb_007040_020 0.0291546406 - - -
20 Hb_001248_160 0.0297930573 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009615_140 Hb_009615_140 Hb_126871_010 Hb_126871_010 Hb_009615_140--Hb_126871_010 Hb_000172_040 Hb_000172_040 Hb_009615_140--Hb_000172_040 Hb_039046_010 Hb_039046_010 Hb_009615_140--Hb_039046_010 Hb_006111_050 Hb_006111_050 Hb_009615_140--Hb_006111_050 Hb_004324_180 Hb_004324_180 Hb_009615_140--Hb_004324_180 Hb_004881_090 Hb_004881_090 Hb_009615_140--Hb_004881_090 Hb_126871_010--Hb_000172_040 Hb_126871_010--Hb_039046_010 Hb_126871_010--Hb_006111_050 Hb_126871_010--Hb_004881_090 Hb_126871_010--Hb_004324_180 Hb_000172_040--Hb_006111_050 Hb_000172_040--Hb_039046_010 Hb_000172_040--Hb_004881_090 Hb_000172_040--Hb_004324_180 Hb_039046_010--Hb_006111_050 Hb_039046_010--Hb_004324_180 Hb_008895_010 Hb_008895_010 Hb_039046_010--Hb_008895_010 Hb_006111_050--Hb_004881_090 Hb_000834_120 Hb_000834_120 Hb_006111_050--Hb_000834_120 Hb_004324_180--Hb_008895_010 Hb_004324_180--Hb_006111_050 Hb_004881_090--Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_004881_090--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_004881_090--Hb_003486_040 Hb_000049_320 Hb_000049_320 Hb_004881_090--Hb_000049_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0189354 0.0614261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis