Hb_009615_150

Information

Type -
Description -
Location Contig9615: 124826-132542
Sequence    

Annotation

kegg
ID cic:CICLE_v10017231mg
description hypothetical protein
nr
ID XP_012065876.1
description PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
swissprot
ID Q94C60
description Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1
trembl
ID A0A067GP01
description Transcription elongation factor SPT4 homolog OS=Citrus sinensis GN=CISIN_1g046522mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor spt4 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63738: 124830-132545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_150 0.0 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
2 Hb_005928_110 0.067699329 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
3 Hb_000445_180 0.0803064152 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
4 Hb_026198_050 0.0850748378 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
5 Hb_021254_030 0.0884962824 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
6 Hb_000109_160 0.0902614888 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
7 Hb_000621_080 0.0906390766 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003994_180 0.0907758358 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
9 Hb_001138_050 0.0933807677 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
10 Hb_004920_040 0.0934941238 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_002150_080 0.0945731651 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
12 Hb_004109_200 0.0961036879 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
13 Hb_002685_170 0.0964167426 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
14 Hb_004324_340 0.0972443201 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000237_080 0.097898831 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
16 Hb_173953_010 0.0982170011 - - hypothetical protein RCOM_1267370 [Ricinus communis]
17 Hb_005357_030 0.0985820858 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
18 Hb_000031_060 0.0999248457 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
19 Hb_001584_330 0.1003530375 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
20 Hb_007590_050 0.1014816559 - - NudC domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009615_150 Hb_009615_150 Hb_005928_110 Hb_005928_110 Hb_009615_150--Hb_005928_110 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_021254_030 Hb_021254_030 Hb_009615_150--Hb_021254_030 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_000621_080 Hb_000621_080 Hb_009615_150--Hb_000621_080 Hb_005928_110--Hb_000109_160 Hb_001610_110 Hb_001610_110 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_005928_110--Hb_000621_080 Hb_000031_060 Hb_000031_060 Hb_000445_180--Hb_000031_060 Hb_005941_040 Hb_005941_040 Hb_000445_180--Hb_005941_040 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_001623_420 Hb_001623_420 Hb_000445_180--Hb_001623_420 Hb_004012_010 Hb_004012_010 Hb_026198_050--Hb_004012_010 Hb_000392_270 Hb_000392_270 Hb_026198_050--Hb_000392_270 Hb_002762_060 Hb_002762_060 Hb_026198_050--Hb_002762_060 Hb_003551_020 Hb_003551_020 Hb_026198_050--Hb_003551_020 Hb_001138_050 Hb_001138_050 Hb_026198_050--Hb_001138_050 Hb_004722_060 Hb_004722_060 Hb_026198_050--Hb_004722_060 Hb_004109_200 Hb_004109_200 Hb_021254_030--Hb_004109_200 Hb_001195_690 Hb_001195_690 Hb_021254_030--Hb_001195_690 Hb_010381_070 Hb_010381_070 Hb_021254_030--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_021254_030--Hb_000139_410 Hb_021254_030--Hb_003994_180 Hb_007590_050 Hb_007590_050 Hb_000109_160--Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_000109_160--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_000109_160--Hb_002685_170 Hb_020956_020 Hb_020956_020 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_000923_020 Hb_000923_020 Hb_000621_080--Hb_000923_020 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_000621_080--Hb_086639_070 Hb_000621_080--Hb_001610_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
326.146 278.59 75.4779 111.795 305.296 228.799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
386.492 301.973 220.697 118.958 48.9395

CAGE analysis