Hb_009615_170

Information

Type -
Description -
Location Contig9615: 142843-153666
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001710mg
description hypothetical protein
nr
ID XP_012068532.1
description PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LRB0
description Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1 PE=1 SV=1
trembl
ID A0A067L8K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24453 PE=4 SV=1
Gene Ontology
ID GO:0005886
description sphingoid long-chain bases kinase 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63744: 142895-153662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_170 0.0 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
2 Hb_001821_090 0.05311677 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
3 Hb_012395_140 0.058167629 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
4 Hb_004884_150 0.0594838359 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
5 Hb_159558_010 0.0596260678 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
6 Hb_000579_230 0.0599056474 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
7 Hb_000174_060 0.0603720097 - - zinc finger family protein [Populus trichocarpa]
8 Hb_001767_140 0.0610323901 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_001550_060 0.0617727556 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
10 Hb_007426_130 0.0639379458 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_007635_030 0.0647756873 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
12 Hb_000025_320 0.0652079708 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
13 Hb_002615_090 0.0655914832 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
14 Hb_004676_010 0.0658696224 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
15 Hb_023226_080 0.0663127424 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
16 Hb_001195_320 0.0665909287 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
17 Hb_002329_040 0.066688088 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_002253_080 0.0672853434 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
19 Hb_000395_070 0.0680665343 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
20 Hb_140049_080 0.0682365302 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_009615_170 Hb_009615_170 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_003284_030 Hb_003284_030 Hb_004884_150--Hb_003284_030 Hb_004884_150--Hb_000174_060 Hb_005357_260 Hb_005357_260 Hb_004884_150--Hb_005357_260 Hb_000025_320 Hb_000025_320 Hb_004884_150--Hb_000025_320 Hb_023226_080 Hb_023226_080 Hb_004884_150--Hb_023226_080 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_159558_010--Hb_001814_030 Hb_159558_010--Hb_000174_060 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_000579_230--Hb_002815_030 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9389 33.6866 15.0355 18.637 23.9662 26.1607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8614 11.3875 18.9644 25.142 16.7593

CAGE analysis