Hb_009615_180

Information

Type -
Description -
Location Contig9615: 155484-156158
Sequence    

Annotation

kegg
ID rcu:RCOM_1454610
description lipoic acid synthetase, putative
nr
ID XP_002513160.1
description lipoic acid synthetase, putative [Ricinus communis]
swissprot
ID P80680
description Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1
trembl
ID B9RGK8
description Lipoic acid synthetase, putative OS=Ricinus communis GN=RCOM_1454610 PE=4 SV=1
Gene Ontology
ID GO:0016992
description ferredoxin-thioredoxin variable chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_180 0.0 - - lipoic acid synthetase, putative [Ricinus communis]
2 Hb_003226_190 0.1504354616 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
3 Hb_000184_030 0.1531087097 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_002783_150 0.1569484724 - - cyclophilin [Hevea brasiliensis]
5 Hb_001294_030 0.1584562144 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
6 Hb_126917_010 0.1592760459 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
7 Hb_000352_220 0.1641095311 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
8 Hb_000032_400 0.1755306888 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
9 Hb_001793_030 0.1770873182 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
10 Hb_026314_030 0.1785886651 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
11 Hb_000890_110 0.178600775 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
12 Hb_000014_190 0.1808594472 - - Phytoene dehydrogenase, putative [Ricinus communis]
13 Hb_000495_080 0.1821864467 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
14 Hb_000834_080 0.1834400657 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
15 Hb_000189_520 0.1840030747 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
16 Hb_078477_060 0.1885964745 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
17 Hb_002085_080 0.1888280443 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 68-like [Jatropha curcas]
18 Hb_007002_010 0.1897791933 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
19 Hb_011053_030 0.193487854 - - -
20 Hb_001373_130 0.1938456601 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009615_180 Hb_009615_180 Hb_003226_190 Hb_003226_190 Hb_009615_180--Hb_003226_190 Hb_000184_030 Hb_000184_030 Hb_009615_180--Hb_000184_030 Hb_002783_150 Hb_002783_150 Hb_009615_180--Hb_002783_150 Hb_001294_030 Hb_001294_030 Hb_009615_180--Hb_001294_030 Hb_126917_010 Hb_126917_010 Hb_009615_180--Hb_126917_010 Hb_000352_220 Hb_000352_220 Hb_009615_180--Hb_000352_220 Hb_003226_190--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_000184_030--Hb_001294_030 Hb_000062_520 Hb_000062_520 Hb_000184_030--Hb_000062_520 Hb_000189_520 Hb_000189_520 Hb_000184_030--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000184_030--Hb_001484_080 Hb_114861_010 Hb_114861_010 Hb_000184_030--Hb_114861_010 Hb_007904_040 Hb_007904_040 Hb_002783_150--Hb_007904_040 Hb_000032_400 Hb_000032_400 Hb_002783_150--Hb_000032_400 Hb_000500_050 Hb_000500_050 Hb_002783_150--Hb_000500_050 Hb_004672_020 Hb_004672_020 Hb_002783_150--Hb_004672_020 Hb_002085_080 Hb_002085_080 Hb_002783_150--Hb_002085_080 Hb_000152_480 Hb_000152_480 Hb_001294_030--Hb_000152_480 Hb_001755_030 Hb_001755_030 Hb_001294_030--Hb_001755_030 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_000834_080 Hb_000834_080 Hb_126917_010--Hb_000834_080 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_003171_030 Hb_003171_030 Hb_126917_010--Hb_003171_030 Hb_011053_030 Hb_011053_030 Hb_126917_010--Hb_011053_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500 Hb_000352_220--Hb_000495_080 Hb_007002_010 Hb_007002_010 Hb_000352_220--Hb_007002_010 Hb_000352_220--Hb_000300_020 Hb_002671_130 Hb_002671_130 Hb_000352_220--Hb_002671_130 Hb_000114_150 Hb_000114_150 Hb_000352_220--Hb_000114_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.879829 4.98272 5.63207 8.90055 1.16527 2.28929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97978 8.49948 0.951273 6.62783 38.6029

CAGE analysis