Hb_009620_020

Information

Type -
Description -
Location Contig9620: 10326-15096
Sequence    

Annotation

kegg
ID rcu:RCOM_1575590
description hypothetical protein
nr
ID XP_002513393.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93W28
description Uncharacterized protein At4g15545 OS=Arabidopsis thaliana GN=At4g15545 PE=1 SV=1
trembl
ID B9RI24
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1575590 PE=4 SV=1
Gene Ontology
ID GO:0016021
description interactor of constitutive active rops 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63764: 10117-15116 , PASA_asmbl_63766: 10243-15064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000071_070 0.1065052045 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
3 Hb_000225_060 0.1146330447 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_000011_400 0.1160416042 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
5 Hb_001123_320 0.1186881784 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
6 Hb_020025_040 0.1210595651 - - sodium-bile acid cotransporter, putative [Ricinus communis]
7 Hb_000483_260 0.1251120986 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
8 Hb_008643_200 0.1270205369 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera]
9 Hb_003994_260 0.1279975425 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
10 Hb_130279_010 0.1307380056 - - PREDICTED: ATP-dependent DNA helicase SRS2-like protein At4g25120 [Jatropha curcas]
11 Hb_004705_080 0.1326506256 transcription factor TF Family: ARF transcription factor, putative [Ricinus communis]
12 Hb_000413_280 0.1336303725 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
13 Hb_011671_440 0.1348164677 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
14 Hb_000069_420 0.1350677054 - - Beclin-1, putative [Ricinus communis]
15 Hb_007317_010 0.1361016888 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002217_020 0.1366923653 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
17 Hb_003266_100 0.1370793815 - - Isomerase protein [Gossypium arboreum]
18 Hb_005285_030 0.1378645587 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
19 Hb_001199_050 0.1395686682 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
20 Hb_000460_030 0.1405355929 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009620_020 Hb_009620_020 Hb_000071_070 Hb_000071_070 Hb_009620_020--Hb_000071_070 Hb_000225_060 Hb_000225_060 Hb_009620_020--Hb_000225_060 Hb_000011_400 Hb_000011_400 Hb_009620_020--Hb_000011_400 Hb_001123_320 Hb_001123_320 Hb_009620_020--Hb_001123_320 Hb_020025_040 Hb_020025_040 Hb_009620_020--Hb_020025_040 Hb_000483_260 Hb_000483_260 Hb_009620_020--Hb_000483_260 Hb_003044_030 Hb_003044_030 Hb_000071_070--Hb_003044_030 Hb_000071_070--Hb_000225_060 Hb_000363_210 Hb_000363_210 Hb_000071_070--Hb_000363_210 Hb_008173_110 Hb_008173_110 Hb_000071_070--Hb_008173_110 Hb_050847_050 Hb_050847_050 Hb_000071_070--Hb_050847_050 Hb_110560_010 Hb_110560_010 Hb_000225_060--Hb_110560_010 Hb_000099_150 Hb_000099_150 Hb_000225_060--Hb_000099_150 Hb_006538_080 Hb_006538_080 Hb_000225_060--Hb_006538_080 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_002701_010 Hb_002701_010 Hb_000225_060--Hb_002701_010 Hb_000011_400--Hb_001123_320 Hb_001840_090 Hb_001840_090 Hb_000011_400--Hb_001840_090 Hb_000011_400--Hb_000363_210 Hb_000011_400--Hb_000225_060 Hb_003994_060 Hb_003994_060 Hb_000011_400--Hb_003994_060 Hb_010883_090 Hb_010883_090 Hb_001123_320--Hb_010883_090 Hb_006114_010 Hb_006114_010 Hb_001123_320--Hb_006114_010 Hb_001123_320--Hb_003994_060 Hb_000840_250 Hb_000840_250 Hb_001123_320--Hb_000840_250 Hb_001123_320--Hb_000483_260 Hb_000236_040 Hb_000236_040 Hb_020025_040--Hb_000236_040 Hb_002228_070 Hb_002228_070 Hb_020025_040--Hb_002228_070 Hb_010098_050 Hb_010098_050 Hb_020025_040--Hb_010098_050 Hb_022250_060 Hb_022250_060 Hb_020025_040--Hb_022250_060 Hb_002217_350 Hb_002217_350 Hb_020025_040--Hb_002217_350 Hb_006615_240 Hb_006615_240 Hb_020025_040--Hb_006615_240 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.46 24.572 28.6371 21.1223 13.0857 9.03486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5087 35.3572 43.6734 36.8131 5.90304

CAGE analysis