Hb_009620_040

Information

Type -
Description -
Location Contig9620: 22082-29791
Sequence    

Annotation

kegg
ID rcu:RCOM_1575560
description Cyclin-L2, putative
nr
ID XP_012087388.1
description PREDICTED: cyclin-T1-3-like [Jatropha curcas]
swissprot
ID Q9FKE6
description Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=1 SV=2
trembl
ID A0A067JZY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22634 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-t1-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63769: 22254-29927 , PASA_asmbl_63770: 22158-27139 , PASA_asmbl_63771: 22254-29636 , PASA_asmbl_63772: 28922-29627 , PASA_asmbl_63773: 22236-29799
cDNA
(Sanger)
(ID:Location)		 044_P02.ab1: 26910-29927 , 051_A18.ab1: 26569-29927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_040 0.0 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
2 Hb_002097_090 0.0567765682 - - Splicing factor 3A subunit, putative [Ricinus communis]
3 Hb_000160_040 0.0595037166 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
4 Hb_000236_370 0.0703812761 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
5 Hb_004934_090 0.0737308016 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
6 Hb_000173_510 0.0746825203 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
7 Hb_000645_150 0.0748171152 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000522_090 0.0750830254 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
9 Hb_000076_080 0.0754759594 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_001504_160 0.0770040075 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
11 Hb_005245_130 0.0780301681 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
12 Hb_000768_110 0.0780683285 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
13 Hb_004162_280 0.0785240124 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
14 Hb_000803_190 0.0785857019 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
15 Hb_000956_030 0.0790156188 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
16 Hb_006913_040 0.0794228204 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
17 Hb_005214_160 0.0797639656 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
18 Hb_004450_010 0.0801314579 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_000977_180 0.0803954499 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
20 Hb_142439_010 0.0805476843 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]

Gene co-expression network

sample Hb_009620_040 Hb_009620_040 Hb_002097_090 Hb_002097_090 Hb_009620_040--Hb_002097_090 Hb_000160_040 Hb_000160_040 Hb_009620_040--Hb_000160_040 Hb_000236_370 Hb_000236_370 Hb_009620_040--Hb_000236_370 Hb_004934_090 Hb_004934_090 Hb_009620_040--Hb_004934_090 Hb_000173_510 Hb_000173_510 Hb_009620_040--Hb_000173_510 Hb_000645_150 Hb_000645_150 Hb_009620_040--Hb_000645_150 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_002097_090--Hb_000645_150 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009627_010 Hb_009627_010 Hb_000160_040--Hb_009627_010 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_000236_370--Hb_000645_150 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_012305_070 Hb_012305_070 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000186_280 Hb_000186_280 Hb_000236_370--Hb_000186_280 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_003428_070 Hb_003428_070 Hb_000173_510--Hb_003428_070 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000173_510--Hb_000768_110 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_000645_150--Hb_012305_070 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.7166 40.6458 16.9949 20.3593 81.3176 93.1867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.5374 43.7926 36.8336 40.0798 18.1848

CAGE analysis