Hb_009620_070

Information

Type -
Description -
Location Contig9620: 43143-46637
Sequence    

Annotation

kegg
ID rcu:RCOM_1575520
description Potassium transporter, putative
nr
ID XP_012087463.1
description PREDICTED: probable potassium transporter 13 [Jatropha curcas]
swissprot
ID Q652J4
description Probable potassium transporter 13 OS=Oryza sativa subsp. japonica GN=HAK13 PE=2 SV=1
trembl
ID B9RI17
description Potassium transporter OS=Ricinus communis GN=RCOM_1575520 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable potassium transporter 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_070 0.0 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
2 Hb_000139_400 0.1646797184 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000685_020 0.1670709062 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
4 Hb_000453_020 0.1679744671 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_002217_360 0.1838040881 - - PREDICTED: nuclear poly(A) polymerase 3 isoform X1 [Jatropha curcas]
6 Hb_002685_160 0.1918774921 - - leucine-rich repeat protein, putative [Ricinus communis]
7 Hb_003488_040 0.1936770288 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
8 Hb_000120_320 0.1954239997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000574_170 0.1960000507 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
10 Hb_010337_040 0.2048016393 - - -
11 Hb_149055_010 0.2061050351 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
12 Hb_136033_010 0.2100194967 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
13 Hb_007632_130 0.2110665613 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
14 Hb_003029_120 0.2120951967 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
15 Hb_002097_080 0.2122581423 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
16 Hb_001138_070 0.2130473122 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
17 Hb_003266_010 0.2133287316 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
18 Hb_152980_020 0.2135367203 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
19 Hb_000959_130 0.2138659644 - - organic anion transporter, putative [Ricinus communis]
20 Hb_031224_010 0.2168410733 - - -

Gene co-expression network

sample Hb_009620_070 Hb_009620_070 Hb_000139_400 Hb_000139_400 Hb_009620_070--Hb_000139_400 Hb_000685_020 Hb_000685_020 Hb_009620_070--Hb_000685_020 Hb_000453_020 Hb_000453_020 Hb_009620_070--Hb_000453_020 Hb_002217_360 Hb_002217_360 Hb_009620_070--Hb_002217_360 Hb_002685_160 Hb_002685_160 Hb_009620_070--Hb_002685_160 Hb_003488_040 Hb_003488_040 Hb_009620_070--Hb_003488_040 Hb_000770_010 Hb_000770_010 Hb_000139_400--Hb_000770_010 Hb_007472_020 Hb_007472_020 Hb_000139_400--Hb_007472_020 Hb_000936_090 Hb_000936_090 Hb_000139_400--Hb_000936_090 Hb_000139_400--Hb_000453_020 Hb_021409_120 Hb_021409_120 Hb_000139_400--Hb_021409_120 Hb_000685_020--Hb_002685_160 Hb_136033_010 Hb_136033_010 Hb_000685_020--Hb_136033_010 Hb_139461_010 Hb_139461_010 Hb_000685_020--Hb_139461_010 Hb_152980_020 Hb_152980_020 Hb_000685_020--Hb_152980_020 Hb_007483_120 Hb_007483_120 Hb_000685_020--Hb_007483_120 Hb_000120_320 Hb_000120_320 Hb_000685_020--Hb_000120_320 Hb_000482_120 Hb_000482_120 Hb_000453_020--Hb_000482_120 Hb_003029_120 Hb_003029_120 Hb_000453_020--Hb_003029_120 Hb_010337_040 Hb_010337_040 Hb_000453_020--Hb_010337_040 Hb_000453_020--Hb_003488_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_000333_030 Hb_000333_030 Hb_002217_360--Hb_000333_030 Hb_000574_170 Hb_000574_170 Hb_002217_360--Hb_000574_170 Hb_010222_040 Hb_010222_040 Hb_002217_360--Hb_010222_040 Hb_000834_180 Hb_000834_180 Hb_002217_360--Hb_000834_180 Hb_001946_200 Hb_001946_200 Hb_002217_360--Hb_001946_200 Hb_093077_010 Hb_093077_010 Hb_002217_360--Hb_093077_010 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_002685_160--Hb_152980_020 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_005724_040 Hb_005724_040 Hb_002685_160--Hb_005724_040 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080 Hb_001268_150 Hb_001268_150 Hb_003488_040--Hb_001268_150 Hb_002973_050 Hb_002973_050 Hb_003488_040--Hb_002973_050 Hb_068804_180 Hb_068804_180 Hb_003488_040--Hb_068804_180 Hb_001950_100 Hb_001950_100 Hb_003488_040--Hb_001950_100 Hb_002168_070 Hb_002168_070 Hb_003488_040--Hb_002168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0149627 0.0272669 0.0741146 0 0.0158683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0257791 0.0343399

CAGE analysis