Hb_009620_090

Information

Type -
Description -
Location Contig9620: 61675-61923
Sequence    

Annotation

kegg
ID pda:103698973
description probable LRR receptor-like serine/threonine-protein kinase At1g56140
nr
ID XP_010094349.1
description hypothetical protein L484_000980 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9SLN9
description Uncharacterized protein OS=Morus notabilis GN=L484_000980 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g56130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63782: 61669-62379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_090 0.0 - - hypothetical protein L484_000980 [Morus notabilis]
2 Hb_000926_230 0.1812177372 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002397_060 0.1860363523 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010488_040 0.2033290501 - - PREDICTED: phosphomannomutase [Populus euphratica]
5 Hb_074836_010 0.2123049107 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000174_050 0.2168749124 - - PREDICTED: gamma-tubulin complex component 2 [Populus euphratica]
7 Hb_000544_030 0.218738507 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001545_050 0.2226163688 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
9 Hb_005048_110 0.2304286779 - - -
10 Hb_071781_010 0.2305842173 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
11 Hb_009620_100 0.2368016596 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
12 Hb_001005_160 0.2391897843 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001454_070 0.239409366 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
14 Hb_089140_120 0.2396014336 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
15 Hb_011942_010 0.2412884672 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001329_190 0.2419928752 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_004162_230 0.2434605426 - - PREDICTED: histone H2B [Jatropha curcas]
18 Hb_000742_190 0.2483964001 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_073799_010 0.2495142287 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000139_490 0.2505066835 - - PREDICTED: transcription factor MUTE [Jatropha curcas]

Gene co-expression network

sample Hb_009620_090 Hb_009620_090 Hb_000926_230 Hb_000926_230 Hb_009620_090--Hb_000926_230 Hb_002397_060 Hb_002397_060 Hb_009620_090--Hb_002397_060 Hb_010488_040 Hb_010488_040 Hb_009620_090--Hb_010488_040 Hb_074836_010 Hb_074836_010 Hb_009620_090--Hb_074836_010 Hb_000174_050 Hb_000174_050 Hb_009620_090--Hb_000174_050 Hb_000544_030 Hb_000544_030 Hb_009620_090--Hb_000544_030 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_000926_230--Hb_074836_010 Hb_005048_110 Hb_005048_110 Hb_002397_060--Hb_005048_110 Hb_004162_230 Hb_004162_230 Hb_002397_060--Hb_004162_230 Hb_001329_170 Hb_001329_170 Hb_002397_060--Hb_001329_170 Hb_000556_130 Hb_000556_130 Hb_002397_060--Hb_000556_130 Hb_002397_060--Hb_000544_030 Hb_010488_040--Hb_001005_160 Hb_000742_190 Hb_000742_190 Hb_010488_040--Hb_000742_190 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190 Hb_155541_010 Hb_155541_010 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_074836_010--Hb_001545_050 Hb_118228_010 Hb_118228_010 Hb_074836_010--Hb_118228_010 Hb_000684_260 Hb_000684_260 Hb_000174_050--Hb_000684_260 Hb_002960_150 Hb_002960_150 Hb_000174_050--Hb_002960_150 Hb_002217_380 Hb_002217_380 Hb_000174_050--Hb_002217_380 Hb_086022_010 Hb_086022_010 Hb_000174_050--Hb_086022_010 Hb_000916_070 Hb_000916_070 Hb_000174_050--Hb_000916_070 Hb_010655_020 Hb_010655_020 Hb_000174_050--Hb_010655_020 Hb_000948_200 Hb_000948_200 Hb_000544_030--Hb_000948_200 Hb_003669_010 Hb_003669_010 Hb_000544_030--Hb_003669_010 Hb_000544_030--Hb_002960_150 Hb_004093_020 Hb_004093_020 Hb_000544_030--Hb_004093_020 Hb_008566_040 Hb_008566_040 Hb_000544_030--Hb_008566_040 Hb_000544_030--Hb_010488_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3116 6.02934 62.0459 65.6185 11.3455 22.2634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.416 25.6702 1.91579 0.945103 0

CAGE analysis