Hb_009620_100

Information

Type -
Description -
Location Contig9620: 61937-73068
Sequence    

Annotation

kegg
ID rcu:RCOM_1575290
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID KDP25093.1
description hypothetical protein JCGZ_22628 [Jatropha curcas]
swissprot
ID C0LGH2
description Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2
trembl
ID A0A067JQH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22628 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at1g56130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63782: 61669-62379 , PASA_asmbl_63783: 66479-66591 , PASA_asmbl_63784: 67187-69479 , PASA_asmbl_63785: 69851-71153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009620_100 0.0 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
2 Hb_000916_070 0.179781494 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
3 Hb_000868_050 0.1808617487 - - RAD51 homolog [Populus nigra]
4 Hb_000227_190 0.1837189744 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
5 Hb_051997_020 0.1882901209 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
6 Hb_026549_010 0.1903845155 - - -
7 Hb_000184_210 0.1914423029 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
8 Hb_000622_130 0.1940226342 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_003001_090 0.1973048935 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
10 Hb_010789_020 0.2014204206 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
11 Hb_002960_150 0.2015301548 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
12 Hb_023765_020 0.2021159186 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
13 Hb_011942_010 0.2045272155 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001221_220 0.2056611845 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
15 Hb_153258_050 0.208765457 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
16 Hb_000172_510 0.2092143248 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
17 Hb_007017_080 0.2108328239 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_001454_070 0.2115094376 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
19 Hb_010381_010 0.2117786794 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_067130_010 0.2125108251 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009620_100 Hb_009620_100 Hb_000916_070 Hb_000916_070 Hb_009620_100--Hb_000916_070 Hb_000868_050 Hb_000868_050 Hb_009620_100--Hb_000868_050 Hb_000227_190 Hb_000227_190 Hb_009620_100--Hb_000227_190 Hb_051997_020 Hb_051997_020 Hb_009620_100--Hb_051997_020 Hb_026549_010 Hb_026549_010 Hb_009620_100--Hb_026549_010 Hb_000184_210 Hb_000184_210 Hb_009620_100--Hb_000184_210 Hb_002960_150 Hb_002960_150 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050 Hb_003001_090 Hb_003001_090 Hb_000916_070--Hb_003001_090 Hb_000868_050--Hb_000916_070 Hb_000868_050--Hb_003001_090 Hb_000868_050--Hb_026549_010 Hb_090158_010 Hb_090158_010 Hb_000868_050--Hb_090158_010 Hb_002490_010 Hb_002490_010 Hb_000868_050--Hb_002490_010 Hb_004195_230 Hb_004195_230 Hb_000868_050--Hb_004195_230 Hb_007017_080 Hb_007017_080 Hb_000227_190--Hb_007017_080 Hb_005695_120 Hb_005695_120 Hb_000227_190--Hb_005695_120 Hb_000227_190--Hb_003001_090 Hb_010577_030 Hb_010577_030 Hb_000227_190--Hb_010577_030 Hb_005054_080 Hb_005054_080 Hb_000227_190--Hb_005054_080 Hb_000227_190--Hb_000916_070 Hb_001454_070 Hb_001454_070 Hb_051997_020--Hb_001454_070 Hb_010789_020 Hb_010789_020 Hb_051997_020--Hb_010789_020 Hb_010381_010 Hb_010381_010 Hb_051997_020--Hb_010381_010 Hb_000197_200 Hb_000197_200 Hb_051997_020--Hb_000197_200 Hb_000009_610 Hb_000009_610 Hb_051997_020--Hb_000009_610 Hb_002217_470 Hb_002217_470 Hb_026549_010--Hb_002217_470 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000654_030 Hb_000654_030 Hb_026549_010--Hb_000654_030 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200 Hb_032717_020 Hb_032717_020 Hb_000184_210--Hb_032717_020 Hb_000473_020 Hb_000473_020 Hb_000184_210--Hb_000473_020 Hb_001511_260 Hb_001511_260 Hb_000184_210--Hb_001511_260 Hb_000584_020 Hb_000584_020 Hb_000184_210--Hb_000584_020 Hb_048476_100 Hb_048476_100 Hb_000184_210--Hb_048476_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303487 0.436076 1.74971 1.97358 0.478108 0.934431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470301 0.947373 0.789168 0.305799 0

CAGE analysis