Hb_009627_010

Information

Type -
Description -
Location Contig9627: 17287-27535
Sequence    

Annotation

kegg
ID rcu:RCOM_1243340
description Protein dom-3, putative
nr
ID XP_002516686.1
description Protein dom-3, putative [Ricinus communis]
swissprot
ID Q8RY73
description Decapping nuclease DXO homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1
trembl
ID B9RSG7
description Protein dom-3, putative OS=Ricinus communis GN=RCOM_1243340 PE=4 SV=1
Gene Ontology
ID GO:0005829
description decapping nuclease dxo chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009627_010 0.0 - - Protein dom-3, putative [Ricinus communis]
2 Hb_000160_040 0.056604556 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
3 Hb_000618_030 0.0583138778 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
4 Hb_001172_010 0.0607542445 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
5 Hb_010381_060 0.0614591979 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
6 Hb_002304_090 0.0639437393 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
7 Hb_033834_060 0.0641574335 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_003362_040 0.0680640137 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
9 Hb_000538_100 0.0684138261 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003052_150 0.0694939602 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
11 Hb_002255_050 0.0702310577 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_006252_040 0.0722170168 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
13 Hb_001493_030 0.0725522511 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
14 Hb_000283_070 0.0729797645 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
15 Hb_004994_040 0.0735704448 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_001680_010 0.0748840898 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
17 Hb_090804_010 0.0750673071 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_000029_130 0.0754175079 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
19 Hb_000173_510 0.0763286464 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
20 Hb_106371_010 0.0764713813 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009627_010 Hb_009627_010 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_106371_010 Hb_106371_010 Hb_000160_040--Hb_106371_010 Hb_009620_040 Hb_009620_040 Hb_000160_040--Hb_009620_040 Hb_000768_110 Hb_000768_110 Hb_000160_040--Hb_000768_110 Hb_000173_510 Hb_000173_510 Hb_000160_040--Hb_000173_510 Hb_003090_080 Hb_003090_080 Hb_000160_040--Hb_003090_080 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_001172_010--Hb_000160_040 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_002304_090--Hb_000538_100 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_003935_030 Hb_003935_030 Hb_002304_090--Hb_003935_030 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_020719_030 Hb_020719_030 Hb_033834_060--Hb_020719_030 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_033834_060--Hb_004429_100 Hb_001488_410 Hb_001488_410 Hb_033834_060--Hb_001488_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8824 13.8702 11.4522 11.0525 29.607 32.8174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.272 10.8814 19.5784 19.0764 11.0519

CAGE analysis