Hb_009642_010

Information

Type -
Description -
Location Contig9642: 2967-9741
Sequence    

Annotation

kegg
ID rcu:RCOM_1331600
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_002521789.1
description Disease resistance protein RFL1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S720
description Disease resistance protein RFL1, putative OS=Ricinus communis GN=RCOM_1331600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009642_010 0.0 - - Disease resistance protein RFL1, putative [Ricinus communis]
2 Hb_002122_040 0.0846565034 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_001105_200 0.0909536225 - - catalytic, putative [Ricinus communis]
4 Hb_001158_080 0.1033148088 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
5 Hb_004712_020 0.1075612139 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
6 Hb_012807_140 0.1088668259 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
7 Hb_088916_010 0.1246450568 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
8 Hb_182021_010 0.1317243034 - - sucrose transporter 4 [Hevea brasiliensis]
9 Hb_002551_090 0.1331709985 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
10 Hb_010926_030 0.1353290083 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
11 Hb_000844_100 0.1354924749 - - hypothetical protein JCGZ_04351 [Jatropha curcas]
12 Hb_008140_060 0.1400198336 - - Cytochrome P450, putative [Theobroma cacao]
13 Hb_009510_060 0.1412389568 - - -
14 Hb_008692_020 0.1435542197 - - -
15 Hb_000740_130 0.1447818207 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_184942_010 0.1461504132 - - STS14 protein precursor, putative [Ricinus communis]
17 Hb_001863_080 0.1464695114 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
18 Hb_000934_290 0.1472935858 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002870_010 0.1519826036 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
20 Hb_000205_210 0.15821749 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_009642_010 Hb_009642_010 Hb_002122_040 Hb_002122_040 Hb_009642_010--Hb_002122_040 Hb_001105_200 Hb_001105_200 Hb_009642_010--Hb_001105_200 Hb_001158_080 Hb_001158_080 Hb_009642_010--Hb_001158_080 Hb_004712_020 Hb_004712_020 Hb_009642_010--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_009642_010--Hb_012807_140 Hb_088916_010 Hb_088916_010 Hb_009642_010--Hb_088916_010 Hb_002122_040--Hb_001105_200 Hb_002122_040--Hb_012807_140 Hb_002122_040--Hb_004712_020 Hb_008692_020 Hb_008692_020 Hb_002122_040--Hb_008692_020 Hb_002870_010 Hb_002870_010 Hb_002122_040--Hb_002870_010 Hb_001105_200--Hb_004712_020 Hb_001105_200--Hb_012807_140 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_000934_290 Hb_000934_290 Hb_001158_080--Hb_000934_290 Hb_002551_090 Hb_002551_090 Hb_001158_080--Hb_002551_090 Hb_184942_010 Hb_184942_010 Hb_001158_080--Hb_184942_010 Hb_008140_060 Hb_008140_060 Hb_001158_080--Hb_008140_060 Hb_003787_060 Hb_003787_060 Hb_001158_080--Hb_003787_060 Hb_004712_020--Hb_012807_140 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_004712_020--Hb_008692_020 Hb_004712_020--Hb_002870_010 Hb_012807_140--Hb_002870_010 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_001838_050 Hb_001838_050 Hb_088916_010--Hb_001838_050 Hb_088916_010--Hb_008140_060 Hb_000740_130 Hb_000740_130 Hb_088916_010--Hb_000740_130 Hb_000920_360 Hb_000920_360 Hb_088916_010--Hb_000920_360 Hb_088916_010--Hb_001105_200 Hb_182021_010 Hb_182021_010 Hb_088916_010--Hb_182021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158643 2.38706 0.144193 2.24671 0.0296972 0.109913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0141675 0.107995 6.89269 1.20411

CAGE analysis