Hb_009646_030

Information

Type -
Description -
Location Contig9646: 21701-30652
Sequence    

Annotation

kegg
ID rcu:RCOM_0939550
description hypothetical protein
nr
ID XP_002519153.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZI4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939550 PE=4 SV=1
Gene Ontology
ID GO:0005829
description bat2 domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63869: 21655-30541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009646_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006620_020 0.0632905615 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
3 Hb_004055_150 0.0649124144 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001926_030 0.069565642 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
5 Hb_000879_200 0.0701088736 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
6 Hb_002997_080 0.0724690303 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_002078_020 0.0725152623 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
8 Hb_008695_020 0.0731274943 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
9 Hb_010139_040 0.0731452627 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003728_080 0.0732434885 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
11 Hb_000853_230 0.0742279078 - - syntaxin, putative [Ricinus communis]
12 Hb_004007_220 0.0744452262 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
13 Hb_000392_300 0.075132356 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
14 Hb_000230_560 0.0763653249 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
15 Hb_006064_010 0.0771912304 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
16 Hb_000498_010 0.078176238 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001493_030 0.0793585603 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
18 Hb_007007_060 0.079562603 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_000618_030 0.0801583177 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
20 Hb_003018_060 0.0809553145 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]

Gene co-expression network

sample Hb_009646_030 Hb_009646_030 Hb_006620_020 Hb_006620_020 Hb_009646_030--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_009646_030--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_009646_030--Hb_001926_030 Hb_000879_200 Hb_000879_200 Hb_009646_030--Hb_000879_200 Hb_002997_080 Hb_002997_080 Hb_009646_030--Hb_002997_080 Hb_002078_020 Hb_002078_020 Hb_009646_030--Hb_002078_020 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_004055_150--Hb_001926_030 Hb_002686_250 Hb_002686_250 Hb_004055_150--Hb_002686_250 Hb_004055_150--Hb_000853_230 Hb_006960_050 Hb_006960_050 Hb_004055_150--Hb_006960_050 Hb_005993_050 Hb_005993_050 Hb_004055_150--Hb_005993_050 Hb_001926_030--Hb_000879_200 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000523_050 Hb_000523_050 Hb_002078_020--Hb_000523_050 Hb_002078_020--Hb_000853_230 Hb_002078_020--Hb_001926_030 Hb_002078_020--Hb_004055_150 Hb_002078_020--Hb_006620_020 Hb_001493_030 Hb_001493_030 Hb_002078_020--Hb_001493_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.9064 13.6469 22.0978 14.7503 35.2679 28.208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3252 20.1975 25.3485 15.8029 15.9899

CAGE analysis