Hb_009646_050

Information

Type -
Description -
Location Contig9646: 34186-35565
Sequence    

Annotation

kegg
ID rcu:RCOM_0939520
description hypothetical protein
nr
ID XP_002519150.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0939520 PE=4 SV=1
Gene Ontology
ID GO:0009507
description maternal effect embryo arrest 14 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63871: 34160-35615 , PASA_asmbl_63872: 34141-35043
cDNA
(Sanger)
(ID:Location)		 033_J16.ab1: 34189-34978 , 048_E14.ab1: 34141-35043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009646_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000685_080 0.079506749 - - protein binding protein, putative [Ricinus communis]
3 Hb_002977_010 0.1014063392 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
4 Hb_000116_570 0.102966694 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
5 Hb_000281_010 0.1039284613 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
6 Hb_010883_080 0.1055596885 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
7 Hb_000016_280 0.110132443 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
8 Hb_002805_170 0.1117355766 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
9 Hb_002612_010 0.1134526476 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
10 Hb_032202_240 0.1146211714 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
11 Hb_148209_020 0.1153071058 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
12 Hb_000186_260 0.1165594904 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
13 Hb_005399_020 0.1170944795 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
14 Hb_001474_030 0.1179181934 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_009178_020 0.1183206098 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
16 Hb_001396_290 0.1201737921 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
17 Hb_002849_080 0.1215332417 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
18 Hb_001616_050 0.1216004844 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
19 Hb_001946_300 0.1218038997 - - PREDICTED: F-box protein At-B [Jatropha curcas]
20 Hb_004225_130 0.1226126912 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009646_050 Hb_009646_050 Hb_000685_080 Hb_000685_080 Hb_009646_050--Hb_000685_080 Hb_002977_010 Hb_002977_010 Hb_009646_050--Hb_002977_010 Hb_000116_570 Hb_000116_570 Hb_009646_050--Hb_000116_570 Hb_000281_010 Hb_000281_010 Hb_009646_050--Hb_000281_010 Hb_010883_080 Hb_010883_080 Hb_009646_050--Hb_010883_080 Hb_000016_280 Hb_000016_280 Hb_009646_050--Hb_000016_280 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_000685_080--Hb_000016_280 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_006316_070 Hb_006316_070 Hb_002977_010--Hb_006316_070 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002849_080 Hb_002849_080 Hb_002977_010--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_002977_010--Hb_148209_020 Hb_000116_570--Hb_000016_280 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_000116_460 Hb_000116_460 Hb_000281_010--Hb_000116_460 Hb_010128_070 Hb_010128_070 Hb_000281_010--Hb_010128_070 Hb_000281_010--Hb_000685_080 Hb_001946_240 Hb_001946_240 Hb_000281_010--Hb_001946_240 Hb_003106_150 Hb_003106_150 Hb_000281_010--Hb_003106_150 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000016_280 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_000016_280--Hb_001227_110 Hb_000016_280--Hb_003125_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.369 89.9073 50.2087 14.4305 107.291 113.905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.033 20.5189 28.8236 19.7163 6.15036

CAGE analysis