Hb_009658_030

Information

Type -
Description -
Location Contig9658: 45107-49664
Sequence    

Annotation

kegg
ID rcu:RCOM_1137840
description hypothetical protein
nr
ID XP_012089641.1
description PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
swissprot
ID F6S215
description AP-5 complex subunit beta-1 OS=Xenopus tropicalis GN=ap5b1 PE=3 SV=1
trembl
ID A0A067JTT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63878: 45219-46500 , PASA_asmbl_63879: 46674-48241 , PASA_asmbl_63881: 49440-49590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009658_030 0.0 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
2 Hb_005977_070 0.063480405 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
3 Hb_002686_230 0.0721901069 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_002272_030 0.0747927548 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
5 Hb_066920_030 0.07560397 - - PREDICTED: adagio protein 1 [Jatropha curcas]
6 Hb_004435_030 0.0762448802 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
7 Hb_002157_080 0.0767071131 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
8 Hb_004204_010 0.0810792252 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
9 Hb_003498_080 0.0817605911 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
10 Hb_000465_280 0.082684084 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
11 Hb_001723_100 0.085278371 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
12 Hb_000504_180 0.0862050401 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_001473_110 0.0867457583 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
14 Hb_001828_170 0.0873143632 - - PREDICTED: protein TPLATE [Jatropha curcas]
15 Hb_009296_080 0.0877231384 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
16 Hb_002686_090 0.0884308794 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
17 Hb_001716_040 0.0893629213 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_008948_020 0.0904873844 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
19 Hb_011249_070 0.0914387519 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
20 Hb_002631_210 0.0914527149 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]

Gene co-expression network

sample Hb_009658_030 Hb_009658_030 Hb_005977_070 Hb_005977_070 Hb_009658_030--Hb_005977_070 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_066920_030 Hb_066920_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_002157_080 Hb_002157_080 Hb_009658_030--Hb_002157_080 Hb_004204_010 Hb_004204_010 Hb_005977_070--Hb_004204_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_005977_070--Hb_066920_030 Hb_004705_020 Hb_004705_020 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_010407_080 Hb_010407_080 Hb_002686_230--Hb_010407_080 Hb_009288_010 Hb_009288_010 Hb_002686_230--Hb_009288_010 Hb_033312_130 Hb_033312_130 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_022425_060 Hb_022425_060 Hb_002686_230--Hb_022425_060 Hb_020178_040 Hb_020178_040 Hb_002272_030--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_002272_030--Hb_009288_010 Hb_001404_110 Hb_001404_110 Hb_066920_030--Hb_001404_110 Hb_066920_030--Hb_001723_100 Hb_004030_080 Hb_004030_080 Hb_066920_030--Hb_004030_080 Hb_066920_030--Hb_002830_010 Hb_000347_400 Hb_000347_400 Hb_066920_030--Hb_000347_400 Hb_112198_010 Hb_112198_010 Hb_004435_030--Hb_112198_010 Hb_001716_040 Hb_001716_040 Hb_004435_030--Hb_001716_040 Hb_008948_020 Hb_008948_020 Hb_004435_030--Hb_008948_020 Hb_000640_040 Hb_000640_040 Hb_004435_030--Hb_000640_040 Hb_005582_040 Hb_005582_040 Hb_004435_030--Hb_005582_040 Hb_001635_120 Hb_001635_120 Hb_004435_030--Hb_001635_120 Hb_000015_170 Hb_000015_170 Hb_002157_080--Hb_000015_170 Hb_002542_110 Hb_002542_110 Hb_002157_080--Hb_002542_110 Hb_001488_180 Hb_001488_180 Hb_002157_080--Hb_001488_180 Hb_001473_110 Hb_001473_110 Hb_002157_080--Hb_001473_110 Hb_002157_080--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89813 7.77537 3.84207 6.45058 1.9147 3.67556
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53809 3.73266 4.61397 4.54374 7.66368

CAGE analysis