Hb_009659_010

Information

Type -
Description -
Location Contig9659: 1391-2646
Sequence    

Annotation

kegg
ID vvi:100260024
description uncharacterized LOC100260024
nr
ID XP_002280177.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
swissprot
ID Q8RWA2
description Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana GN=MED9 PE=1 SV=1
trembl
ID A5B4B2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g02270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009659_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
2 Hb_001951_270 0.1150105015 - - -
3 Hb_126216_010 0.1238094351 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
4 Hb_004421_020 0.1247633059 - - -
5 Hb_021924_010 0.137377276 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
6 Hb_003988_040 0.1443582442 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
7 Hb_000975_250 0.1496096657 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
8 Hb_003607_170 0.1501193773 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
9 Hb_000045_250 0.1519909162 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
10 Hb_023732_060 0.1579957329 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
11 Hb_007416_020 0.1658004674 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
12 Hb_001882_070 0.1697046483 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
13 Hb_004007_180 0.1703227869 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_026398_010 0.1712352199 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
15 Hb_009659_020 0.1749905202 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
16 Hb_124055_010 0.1753498058 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
17 Hb_003226_210 0.176517867 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
18 Hb_000617_090 0.1786774446 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
19 Hb_000599_280 0.1789700629 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
20 Hb_000275_130 0.1792263539 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]

Gene co-expression network

sample Hb_009659_010 Hb_009659_010 Hb_001951_270 Hb_001951_270 Hb_009659_010--Hb_001951_270 Hb_126216_010 Hb_126216_010 Hb_009659_010--Hb_126216_010 Hb_004421_020 Hb_004421_020 Hb_009659_010--Hb_004421_020 Hb_021924_010 Hb_021924_010 Hb_009659_010--Hb_021924_010 Hb_003988_040 Hb_003988_040 Hb_009659_010--Hb_003988_040 Hb_000975_250 Hb_000975_250 Hb_009659_010--Hb_000975_250 Hb_001951_270--Hb_126216_010 Hb_000645_190 Hb_000645_190 Hb_001951_270--Hb_000645_190 Hb_003607_170 Hb_003607_170 Hb_001951_270--Hb_003607_170 Hb_026398_010 Hb_026398_010 Hb_001951_270--Hb_026398_010 Hb_001951_270--Hb_000975_250 Hb_126216_010--Hb_000975_250 Hb_000565_030 Hb_000565_030 Hb_126216_010--Hb_000565_030 Hb_000045_250 Hb_000045_250 Hb_126216_010--Hb_000045_250 Hb_012251_010 Hb_012251_010 Hb_126216_010--Hb_012251_010 Hb_023732_060 Hb_023732_060 Hb_004421_020--Hb_023732_060 Hb_000656_340 Hb_000656_340 Hb_004421_020--Hb_000656_340 Hb_000275_130 Hb_000275_130 Hb_004421_020--Hb_000275_130 Hb_004421_020--Hb_021924_010 Hb_006541_020 Hb_006541_020 Hb_004421_020--Hb_006541_020 Hb_000975_180 Hb_000975_180 Hb_021924_010--Hb_000975_180 Hb_001488_400 Hb_001488_400 Hb_021924_010--Hb_001488_400 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_021924_010--Hb_003988_040 Hb_005463_060 Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_000975_250--Hb_003607_170 Hb_000948_190 Hb_000948_190 Hb_000975_250--Hb_000948_190 Hb_000617_090 Hb_000617_090 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1512 7.96998 7.56127 19.246 0.126184 23.9789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7213 68.6881 14.6921 7.99255 5.60289

CAGE analysis