Hb_009662_030

Information

Type -
Description -
Location Contig9662: 27230-27460
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_904655
description hypothetical protein
nr
ID KDP41341.1
description hypothetical protein JCGZ_15748 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15748 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63902: 27182-27807
cDNA
(Sanger)
(ID:Location)		 001_K03.ab1: 27188-27524 , 002_G17.ab1: 27182-27567 , 002_L20.ab1: 27182-27564 , 004_E16.ab1: 27182-27581 , 007_A15.ab1: 27182-27569 , 007_I19.ab1: 27188-27605 , 008_E13.ab1: 27186-27562 , 008_I08.ab1: 27189-27555 , 010_I20.ab1: 27182-27588 , 010_P19.ab1: 27182-27578 , 011_J11.ab1: 27182-27567 , 011_L01.ab1: 27189-27619 , 015_A22.ab1: 27182-27601 , 015_F11.ab1: 27182-27601 , 015_I14.ab1: 27188-27605 , 015_I22.ab1: 27182-27587 , 017_H14.ab1: 27189-27587 , 022_E22.ab1: 27188-27605 , 022_K20.ab1: 27182-27565 , 023_G03.ab1: 27182-27714 , 024_F15.ab1: 27182-27587 , 024_K08.ab1: 27183-27579 , 024_L12.ab1: 27191-27601 , 024_P21.ab1: 27188-27605 , 030_D24.ab1: 27182-27598 , 031_K14.ab1: 27189-27599 , 033_J17.ab1: 27182-27587 , 034_J24.ab1: 27186-27562 , 037_C18.ab1: 27182-27587 , 037_G04.ab1: 27182-27580 , 037_N08.ab1: 27182-27598 , 037_O13.ab1: 27189-27607 , 038_M03.ab1: 27182-27579 , 039_E08.ab1: 27182-27603 , 040_H07.ab1: 27188-27568 , 042_D02.ab1: 27189-27569 , 044_G18.ab1: 27188-27605 , 046_A11.ab1: 27186-27559 , 047_K07.ab1: 27182-27587 , 050_F06.ab1: 27134-27569 , 050_P13.ab1: 27182-27586 , 052_G13.ab1: 27182-27605 , 053_E20.ab1: 27182-27555 , 053_G14.ab1: 27182-27598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009662_030 0.0 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
2 Hb_002232_180 0.1072450577 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
3 Hb_017134_040 0.1107058035 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
4 Hb_002890_220 0.1244730456 - - hypothetical protein JCGZ_24899 [Jatropha curcas]
5 Hb_007810_040 0.1325233852 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
6 Hb_004813_010 0.1329767564 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000264_190 0.1333146361 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
8 Hb_002609_260 0.133407884 - - CCCH-type zinc finger protein [Hevea brasiliensis]
9 Hb_004738_090 0.1337297183 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005488_100 0.1354686805 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
11 Hb_026048_090 0.1359817474 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010098_080 0.1362744958 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
13 Hb_116701_020 0.1367535575 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000771_140 0.1382009267 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
15 Hb_001780_060 0.1395186928 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
16 Hb_007178_010 0.1400455982 - - pseudo-hevein [Hevea brasiliensis]
17 Hb_000117_040 0.1408963695 - - 30S ribosomal protein S6A [Hevea brasiliensis]
18 Hb_002374_340 0.1411593591 - - Two-component response regulator ARR9, putative [Ricinus communis]
19 Hb_000958_010 0.1412342215 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011609_190 0.1414491547 - - 14-3-3 protein 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_009662_030 Hb_009662_030 Hb_002232_180 Hb_002232_180 Hb_009662_030--Hb_002232_180 Hb_017134_040 Hb_017134_040 Hb_009662_030--Hb_017134_040 Hb_002890_220 Hb_002890_220 Hb_009662_030--Hb_002890_220 Hb_007810_040 Hb_007810_040 Hb_009662_030--Hb_007810_040 Hb_004813_010 Hb_004813_010 Hb_009662_030--Hb_004813_010 Hb_000264_190 Hb_000264_190 Hb_009662_030--Hb_000264_190 Hb_007178_010 Hb_007178_010 Hb_002232_180--Hb_007178_010 Hb_002232_180--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_002232_180--Hb_002067_160 Hb_002609_260 Hb_002609_260 Hb_002232_180--Hb_002609_260 Hb_004738_090 Hb_004738_090 Hb_002232_180--Hb_004738_090 Hb_005488_100 Hb_005488_100 Hb_002232_180--Hb_005488_100 Hb_005730_020 Hb_005730_020 Hb_017134_040--Hb_005730_020 Hb_017134_040--Hb_002890_220 Hb_000329_610 Hb_000329_610 Hb_017134_040--Hb_000329_610 Hb_017134_040--Hb_007178_010 Hb_005063_010 Hb_005063_010 Hb_017134_040--Hb_005063_010 Hb_003786_110 Hb_003786_110 Hb_017134_040--Hb_003786_110 Hb_002374_340 Hb_002374_340 Hb_002890_220--Hb_002374_340 Hb_002890_220--Hb_000264_190 Hb_002890_220--Hb_002609_260 Hb_010931_100 Hb_010931_100 Hb_002890_220--Hb_010931_100 Hb_002890_220--Hb_005730_020 Hb_003304_080 Hb_003304_080 Hb_007810_040--Hb_003304_080 Hb_007810_040--Hb_007178_010 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_007810_040--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_007810_040--Hb_043637_010 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_000264_190--Hb_000563_540 Hb_000264_190--Hb_005730_020 Hb_009510_030 Hb_009510_030 Hb_000264_190--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6291.47 108.444 104.887 302.58 5889.15 3129.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4297.59 3041.51 2518.71 1172.86 84.6855

CAGE analysis