Hb_009662_040

Information

Type -
Description -
Location Contig9662: 29119-30149
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15010g
description POPTRDRAFT_769783; hypothetical protein
nr
ID XP_011009780.1
description PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HWW3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15010g PE=4 SV=2
Gene Ontology
ID GO:0016787
description universal stress family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63903: 29086-30045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009662_040 0.0 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
2 Hb_000666_040 0.0625318805 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
3 Hb_002999_020 0.0753261944 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
4 Hb_153258_030 0.0872151817 - - hypothetical protein RCOM_0853150 [Ricinus communis]
5 Hb_016734_110 0.0885806499 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
6 Hb_001623_560 0.0902388546 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
7 Hb_000742_040 0.0918819615 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
8 Hb_000796_110 0.0949821962 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
9 Hb_002228_120 0.1019691798 - - potassium channel beta, putative [Ricinus communis]
10 Hb_140627_040 0.1039438556 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
11 Hb_000815_010 0.1050948872 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
12 Hb_002809_040 0.1069026433 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001496_150 0.1080198394 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_001416_120 0.1091604867 - - caspase, putative [Ricinus communis]
15 Hb_009062_020 0.1117556213 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
16 Hb_124677_070 0.1120656557 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
17 Hb_005666_010 0.1165738363 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
18 Hb_009367_070 0.1179369147 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
19 Hb_000802_040 0.1194338113 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
20 Hb_001775_140 0.1197330516 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_009662_040 Hb_009662_040 Hb_000666_040 Hb_000666_040 Hb_009662_040--Hb_000666_040 Hb_002999_020 Hb_002999_020 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_016734_110 Hb_016734_110 Hb_009662_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_009662_040--Hb_001623_560 Hb_000742_040 Hb_000742_040 Hb_009662_040--Hb_000742_040 Hb_000666_040--Hb_016734_110 Hb_000666_040--Hb_001623_560 Hb_007317_050 Hb_007317_050 Hb_000666_040--Hb_007317_050 Hb_000666_040--Hb_002999_020 Hb_001775_140 Hb_001775_140 Hb_000666_040--Hb_001775_140 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_002999_020--Hb_016734_110 Hb_153258_030--Hb_000796_110 Hb_090210_010 Hb_090210_010 Hb_153258_030--Hb_090210_010 Hb_001496_150 Hb_001496_150 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_001416_120 Hb_153258_030--Hb_000742_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_000742_040 Hb_016734_110--Hb_153258_030 Hb_016734_110--Hb_001496_150 Hb_001623_560--Hb_016734_110 Hb_001623_560--Hb_001775_140 Hb_001623_560--Hb_000742_040 Hb_001623_560--Hb_002999_020 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_000796_110 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0762239 0.176056 5.68569 17.9192 0.0338884 0.0867694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0778108 0 0 0.099439 1.57819

CAGE analysis