Hb_009662_070

Information

Type transcription factor
Description TF Family: MIKC
Location Contig9662: 85020-90569
Sequence    

Annotation

kegg
ID tcc:TCM_011475
description K-box region and MADS-box transcription factor family protein
nr
ID XP_012067821.1
description PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
swissprot
ID P0DI14
description Floral homeotic protein APETALA 1 OS=Brassica rapa subsp. pekinensis GN=AP1 PE=3 SV=1
trembl
ID A0A067LA08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15742 PE=4 SV=1
Gene Ontology
ID GO:0005634
description truncated transcription factor cauliflower a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009662_070 0.0 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
2 Hb_029622_040 0.089790748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002025_040 0.1493275751 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
4 Hb_000005_140 0.1859958872 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
5 Hb_069338_010 0.2010861259 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002045_030 0.2042271266 transcription factor TF Family: AUX/IAA hypothetical protein CISIN_1g047687mg [Citrus sinensis]
7 Hb_135737_010 0.2145921005 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
8 Hb_000392_500 0.2171203618 - - conserved hypothetical protein [Ricinus communis]
9 Hb_064445_040 0.2201837439 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
10 Hb_064396_020 0.2202449607 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
11 Hb_010288_010 0.220624659 - - Beta-glucosidase, putative [Ricinus communis]
12 Hb_077027_010 0.2213766963 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
13 Hb_000007_190 0.2217819879 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
14 Hb_000111_060 0.2230581904 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
15 Hb_010166_010 0.2232263307 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_168392_010 0.2266378377 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_001080_240 0.226946456 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
18 Hb_152868_020 0.2271525767 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
19 Hb_000392_350 0.227178992 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000347_060 0.2276826842 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]

Gene co-expression network

sample Hb_009662_070 Hb_009662_070 Hb_029622_040 Hb_029622_040 Hb_009662_070--Hb_029622_040 Hb_002025_040 Hb_002025_040 Hb_009662_070--Hb_002025_040 Hb_000005_140 Hb_000005_140 Hb_009662_070--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_009662_070--Hb_069338_010 Hb_002045_030 Hb_002045_030 Hb_009662_070--Hb_002045_030 Hb_135737_010 Hb_135737_010 Hb_009662_070--Hb_135737_010 Hb_000007_190 Hb_000007_190 Hb_029622_040--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_029622_040--Hb_000392_500 Hb_103225_040 Hb_103225_040 Hb_029622_040--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_029622_040--Hb_152868_020 Hb_003793_010 Hb_003793_010 Hb_029622_040--Hb_003793_010 Hb_002025_040--Hb_029622_040 Hb_000500_250 Hb_000500_250 Hb_002025_040--Hb_000500_250 Hb_005653_010 Hb_005653_010 Hb_002025_040--Hb_005653_010 Hb_151052_010 Hb_151052_010 Hb_002025_040--Hb_151052_010 Hb_020178_030 Hb_020178_030 Hb_002025_040--Hb_020178_030 Hb_000005_140--Hb_069338_010 Hb_000438_120 Hb_000438_120 Hb_000005_140--Hb_000438_120 Hb_005914_120 Hb_005914_120 Hb_000005_140--Hb_005914_120 Hb_002968_050 Hb_002968_050 Hb_000005_140--Hb_002968_050 Hb_002759_050 Hb_002759_050 Hb_000005_140--Hb_002759_050 Hb_053272_010 Hb_053272_010 Hb_069338_010--Hb_053272_010 Hb_002183_080 Hb_002183_080 Hb_069338_010--Hb_002183_080 Hb_000099_140 Hb_000099_140 Hb_069338_010--Hb_000099_140 Hb_069338_010--Hb_002968_050 Hb_000392_350 Hb_000392_350 Hb_002045_030--Hb_000392_350 Hb_006895_010 Hb_006895_010 Hb_002045_030--Hb_006895_010 Hb_094439_040 Hb_094439_040 Hb_002045_030--Hb_094439_040 Hb_001289_040 Hb_001289_040 Hb_002045_030--Hb_001289_040 Hb_000707_090 Hb_000707_090 Hb_002045_030--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_002045_030--Hb_000557_080 Hb_064396_020 Hb_064396_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000111_060 Hb_000111_060 Hb_135737_010--Hb_000111_060 Hb_135737_010--Hb_000392_500 Hb_010288_010 Hb_010288_010 Hb_135737_010--Hb_010288_010 Hb_064445_040 Hb_064445_040 Hb_135737_010--Hb_064445_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0202728 0.266977 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0460454 0 0 0.186722

CAGE analysis