Hb_009666_040

Information

Type -
Description -
Location Contig9666: 75395-77714
Sequence    

Annotation

kegg
ID rcu:RCOM_1291360
description glutathione transferase, putative
nr
ID XP_002524149.1
description glutathione transferase, putative [Ricinus communis]
swissprot
ID P42620
description Glutathionyl-hydroquinone reductase YqjG OS=Escherichia coli (strain K12) GN=yqjG PE=1 SV=1
trembl
ID B9SDT0
description Glutathione transferase, putative OS=Ricinus communis GN=RCOM_1291360 PE=4 SV=1
Gene Ontology
ID GO:0005515
description glutathione s-transferase omega-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63906: 74563-77806 , PASA_asmbl_63907: 74965-75084
cDNA
(Sanger)
(ID:Location)		 006_E19.ab1: 74646-76438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009666_040 0.0 - - glutathione transferase, putative [Ricinus communis]
2 Hb_001829_060 0.0567508976 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_001141_280 0.063391641 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
4 Hb_000239_010 0.0640050846 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000205_270 0.0672362601 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
6 Hb_000329_310 0.0729425995 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_000979_230 0.0740160556 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
8 Hb_000086_070 0.0772109103 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
9 Hb_001109_020 0.0788635315 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000444_050 0.0795874779 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
11 Hb_000046_110 0.0810784998 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
12 Hb_000046_290 0.0825352883 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
13 Hb_000431_010 0.0830665878 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
14 Hb_006117_070 0.0833726885 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
15 Hb_101705_030 0.0853625811 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_002759_060 0.0869027329 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
17 Hb_009486_130 0.0873602519 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
18 Hb_000963_180 0.0875516815 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
19 Hb_000230_540 0.0882590913 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
20 Hb_003927_130 0.0884053303 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_009666_040 Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_009666_040--Hb_001829_060 Hb_001141_280 Hb_001141_280 Hb_009666_040--Hb_001141_280 Hb_000239_010 Hb_000239_010 Hb_009666_040--Hb_000239_010 Hb_000205_270 Hb_000205_270 Hb_009666_040--Hb_000205_270 Hb_000329_310 Hb_000329_310 Hb_009666_040--Hb_000329_310 Hb_000979_230 Hb_000979_230 Hb_009666_040--Hb_000979_230 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_001141_280--Hb_000239_010 Hb_001141_280--Hb_001109_020 Hb_000239_010--Hb_000979_230 Hb_003226_280 Hb_003226_280 Hb_000239_010--Hb_003226_280 Hb_116898_010 Hb_116898_010 Hb_000239_010--Hb_116898_010 Hb_000239_010--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010 Hb_000671_090 Hb_000671_090 Hb_000979_230--Hb_000671_090 Hb_000270_370 Hb_000270_370 Hb_000979_230--Hb_000270_370 Hb_001691_210 Hb_001691_210 Hb_000979_230--Hb_001691_210 Hb_000979_230--Hb_001109_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.6459 8.30627 19.381 21.1339 30.9101 61.9779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.3933 77.6179 80.7985 27.866 16.8283

CAGE analysis