Hb_009674_010

Information

Type -
Description -
Location Contig9674: 9980-11989
Sequence    

Annotation

kegg
ID aag:AaeL_AAEL007687
description transmembrane 9 superfamily protein member 4
nr
ID XP_001658596.1
description AAEL007687-PA [Aedes aegypti]
swissprot
ID Q66HG5
description Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1
trembl
ID M0SBS0
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009674_010 0.0 - - AAEL007687-PA [Aedes aegypti]
2 Hb_001216_110 0.1065136814 - - PREDICTED: protein GPR107-like [Jatropha curcas]
3 Hb_000684_310 0.1081506408 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
4 Hb_002129_020 0.1118312533 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
5 Hb_000679_040 0.1186082182 - - Cellulose synthase 1 [Theobroma cacao]
6 Hb_001195_090 0.1190797324 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
7 Hb_028639_030 0.1214423705 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
8 Hb_000003_310 0.1251356648 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
9 Hb_010042_020 0.1258154543 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
10 Hb_033152_070 0.1307971325 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
11 Hb_005348_110 0.1320238652 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
12 Hb_021576_070 0.1321981954 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
13 Hb_000236_190 0.1365162415 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
14 Hb_044486_030 0.1410205377 - - DMI1, partial [Cycas revoluta]
15 Hb_011360_110 0.1411988936 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
16 Hb_000696_070 0.1414875322 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
17 Hb_012707_040 0.1430324171 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
18 Hb_006469_070 0.1437192547 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
19 Hb_000152_710 0.1441012562 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
20 Hb_002157_270 0.1454379275 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]

Gene co-expression network

sample Hb_009674_010 Hb_009674_010 Hb_001216_110 Hb_001216_110 Hb_009674_010--Hb_001216_110 Hb_000684_310 Hb_000684_310 Hb_009674_010--Hb_000684_310 Hb_002129_020 Hb_002129_020 Hb_009674_010--Hb_002129_020 Hb_000679_040 Hb_000679_040 Hb_009674_010--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_009674_010--Hb_001195_090 Hb_028639_030 Hb_028639_030 Hb_009674_010--Hb_028639_030 Hb_001216_110--Hb_000679_040 Hb_001216_110--Hb_028639_030 Hb_021576_070 Hb_021576_070 Hb_001216_110--Hb_021576_070 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_000003_310 Hb_000003_310 Hb_000684_310--Hb_000003_310 Hb_000684_310--Hb_001216_110 Hb_000684_310--Hb_000679_040 Hb_000254_070 Hb_000254_070 Hb_000684_310--Hb_000254_070 Hb_001105_130 Hb_001105_130 Hb_000684_310--Hb_001105_130 Hb_002129_020--Hb_001195_090 Hb_020586_010 Hb_020586_010 Hb_002129_020--Hb_020586_010 Hb_002129_020--Hb_028639_030 Hb_002157_270 Hb_002157_270 Hb_002129_020--Hb_002157_270 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070 Hb_001195_090--Hb_028639_030 Hb_001195_090--Hb_001216_110 Hb_002596_080 Hb_002596_080 Hb_001195_090--Hb_002596_080 Hb_001195_090--Hb_000684_310 Hb_001493_060 Hb_001493_060 Hb_001195_090--Hb_001493_060 Hb_000570_020 Hb_000570_020 Hb_028639_030--Hb_000570_020 Hb_028639_030--Hb_021576_070 Hb_011360_110 Hb_011360_110 Hb_028639_030--Hb_011360_110 Hb_028639_030--Hb_000679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.723716 2.35394 1.85471 13.755 1.08683 1.9677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32419 1.14787 2.34448 4.24334 6.42015

CAGE analysis