Hb_009680_040

Information

Type transcription factor
Description TF Family: WRKY
Location Contig9680: 35492-36863
Sequence    

Annotation

kegg
ID rcu:RCOM_1689100
description WRKY transcription factor, putative
nr
ID XP_002509862.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID B9RCH8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1689100 PE=4 SV=1
Gene Ontology
ID GO:0003700
description wrky transcription factor 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009680_040 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_003398_140 0.1932223977 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_001638_070 0.1964214291 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
4 Hb_028271_020 0.2008829717 - - acyl-CoA oxidase, putative [Ricinus communis]
5 Hb_003540_200 0.2041020179 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_001488_370 0.2087838388 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_000997_190 0.2099440236 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
8 Hb_000139_430 0.212398668 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
9 Hb_002811_080 0.2146655088 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
10 Hb_000788_010 0.215469565 - - 40S ribosomal protein S16A [Hevea brasiliensis]
11 Hb_012053_010 0.2179777269 - - srpk, putative [Ricinus communis]
12 Hb_012053_050 0.2224817806 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
13 Hb_005015_030 0.2270040903 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
14 Hb_000676_310 0.2270869566 - - BnaC09g40680D [Brassica napus]
15 Hb_001369_600 0.2276001059 - - kinase, putative [Ricinus communis]
16 Hb_006028_020 0.2290647102 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
17 Hb_006006_050 0.2292965945 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
18 Hb_086692_020 0.2295963052 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
19 Hb_027472_160 0.2304621532 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
20 Hb_000330_070 0.2319972845 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_009680_040 Hb_009680_040 Hb_003398_140 Hb_003398_140 Hb_009680_040--Hb_003398_140 Hb_001638_070 Hb_001638_070 Hb_009680_040--Hb_001638_070 Hb_028271_020 Hb_028271_020 Hb_009680_040--Hb_028271_020 Hb_003540_200 Hb_003540_200 Hb_009680_040--Hb_003540_200 Hb_001488_370 Hb_001488_370 Hb_009680_040--Hb_001488_370 Hb_000997_190 Hb_000997_190 Hb_009680_040--Hb_000997_190 Hb_086692_020 Hb_086692_020 Hb_003398_140--Hb_086692_020 Hb_000094_110 Hb_000094_110 Hb_003398_140--Hb_000094_110 Hb_003847_020 Hb_003847_020 Hb_003398_140--Hb_003847_020 Hb_002067_140 Hb_002067_140 Hb_003398_140--Hb_002067_140 Hb_003398_140--Hb_028271_020 Hb_026687_010 Hb_026687_010 Hb_003398_140--Hb_026687_010 Hb_001638_070--Hb_000997_190 Hb_002784_100 Hb_002784_100 Hb_001638_070--Hb_002784_100 Hb_002231_030 Hb_002231_030 Hb_001638_070--Hb_002231_030 Hb_001638_070--Hb_028271_020 Hb_001638_070--Hb_001488_370 Hb_001449_100 Hb_001449_100 Hb_028271_020--Hb_001449_100 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_028271_020--Hb_000997_190 Hb_000110_170 Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003020_330 Hb_003020_330 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_003540_200--Hb_012053_010 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_012545_050 Hb_012545_050 Hb_001488_370--Hb_012545_050 Hb_012053_050 Hb_012053_050 Hb_001488_370--Hb_012053_050 Hb_001369_600 Hb_001369_600 Hb_001488_370--Hb_001369_600 Hb_001488_370--Hb_000997_190 Hb_001437_130 Hb_001437_130 Hb_001488_370--Hb_001437_130 Hb_001776_170 Hb_001776_170 Hb_001488_370--Hb_001776_170 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_000997_190--Hb_002231_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03034 1.03752 2.5748 1.00351 0.21104 1.08972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.832348 12.2571 3.83369 1.95662 0.149568

CAGE analysis