Hb_009686_010

Information

Type -
Description -
Location Contig9686: 14362-16313
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10370g
description POPTRDRAFT_722208; Thioredoxin M-type 3 family protein
nr
ID AEC03325.1
description mitochondrial thioredoxin 2 [Hevea brasiliensis]
swissprot
ID Q9SEU7
description Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana GN=GAT1 PE=2 SV=2
trembl
ID I1SSJ6
description Mitochondrial thioredoxin 2 OS=Hevea brasiliensis GN=TrxM2 PE=2 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009686_010 0.0 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
2 Hb_027255_010 0.1514412133 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
3 Hb_114868_010 0.1822917815 - - -
4 Hb_001899_010 0.2131698476 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
5 Hb_003529_220 0.2139222001 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_005799_030 0.2145078545 - - PREDICTED: uncharacterized protein LOC103926623 [Pyrus x bretschneideri]
7 Hb_003529_210 0.2176287749 - - -
8 Hb_000205_070 0.2183805999 - - kinase, putative [Ricinus communis]
9 Hb_001135_270 0.2185819929 - - -
10 Hb_179763_010 0.2232474587 - - -
11 Hb_001584_230 0.2314649148 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
12 Hb_066784_020 0.2375869751 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008053_020 0.239776749 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000123_390 0.2398041574 - - conserved hypothetical protein [Ricinus communis]
15 Hb_081636_010 0.2440435889 - - -
16 Hb_002326_060 0.2504743419 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
17 Hb_001723_110 0.2534279427 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
18 Hb_000176_060 0.2536308087 - - unnamed protein product [Vitis vinifera]
19 Hb_000398_130 0.2549692946 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
20 Hb_067345_050 0.2567783477 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_009686_010 Hb_009686_010 Hb_027255_010 Hb_027255_010 Hb_009686_010--Hb_027255_010 Hb_114868_010 Hb_114868_010 Hb_009686_010--Hb_114868_010 Hb_001899_010 Hb_001899_010 Hb_009686_010--Hb_001899_010 Hb_003529_220 Hb_003529_220 Hb_009686_010--Hb_003529_220 Hb_005799_030 Hb_005799_030 Hb_009686_010--Hb_005799_030 Hb_003529_210 Hb_003529_210 Hb_009686_010--Hb_003529_210 Hb_000205_070 Hb_000205_070 Hb_027255_010--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_027255_010--Hb_009189_030 Hb_027255_010--Hb_114868_010 Hb_002326_060 Hb_002326_060 Hb_027255_010--Hb_002326_060 Hb_000853_290 Hb_000853_290 Hb_027255_010--Hb_000853_290 Hb_001584_230 Hb_001584_230 Hb_114868_010--Hb_001584_230 Hb_081636_010 Hb_081636_010 Hb_114868_010--Hb_081636_010 Hb_114868_010--Hb_005799_030 Hb_029866_010 Hb_029866_010 Hb_114868_010--Hb_029866_010 Hb_001135_270 Hb_001135_270 Hb_114868_010--Hb_001135_270 Hb_001899_010--Hb_003529_210 Hb_001899_010--Hb_005799_030 Hb_001899_010--Hb_001135_270 Hb_179763_010 Hb_179763_010 Hb_001899_010--Hb_179763_010 Hb_001899_010--Hb_003529_220 Hb_066784_020 Hb_066784_020 Hb_001899_010--Hb_066784_020 Hb_003529_220--Hb_179763_010 Hb_108404_010 Hb_108404_010 Hb_003529_220--Hb_108404_010 Hb_002673_050 Hb_002673_050 Hb_003529_220--Hb_002673_050 Hb_091369_010 Hb_091369_010 Hb_003529_220--Hb_091369_010 Hb_008473_010 Hb_008473_010 Hb_003529_220--Hb_008473_010 Hb_005799_030--Hb_001135_270 Hb_005799_030--Hb_081636_010 Hb_005799_030--Hb_001584_230 Hb_000123_390 Hb_000123_390 Hb_005799_030--Hb_000123_390 Hb_005799_030--Hb_179763_010 Hb_003529_210--Hb_066784_020 Hb_064951_010 Hb_064951_010 Hb_003529_210--Hb_064951_010 Hb_067345_050 Hb_067345_050 Hb_003529_210--Hb_067345_050 Hb_076583_010 Hb_076583_010 Hb_003529_210--Hb_076583_010 Hb_003529_210--Hb_179763_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216816 0.277581 0 0 1.76663 1.56196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis