Hb_009686_030

Information

Type -
Description -
Location Contig9686: 19157-23000
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63922: 19192-22893 , PASA_asmbl_63923: 20662-20977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009686_030 0.0 - - -
2 Hb_156947_010 0.0530834039 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
3 Hb_008878_030 0.0679514612 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
4 Hb_143766_050 0.0756524584 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
5 Hb_002686_020 0.084617558 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
6 Hb_001540_010 0.0850727711 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
7 Hb_019253_030 0.087952628 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
8 Hb_001292_020 0.088706652 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
9 Hb_003050_080 0.0889656424 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_007416_030 0.0902551502 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
11 Hb_005511_160 0.0908368306 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
12 Hb_002259_070 0.0915117599 - - taz protein, putative [Ricinus communis]
13 Hb_000134_330 0.092112374 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_003734_140 0.0932495119 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004048_110 0.0936005638 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
16 Hb_012753_160 0.0947713385 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_000127_180 0.0948469769 - - 40S ribosomal protein S18, putative [Ricinus communis]
18 Hb_000510_110 0.0988100983 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
19 Hb_001780_040 0.0997159936 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
20 Hb_034299_050 0.0999991176 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]

Gene co-expression network

sample Hb_009686_030 Hb_009686_030 Hb_156947_010 Hb_156947_010 Hb_009686_030--Hb_156947_010 Hb_008878_030 Hb_008878_030 Hb_009686_030--Hb_008878_030 Hb_143766_050 Hb_143766_050 Hb_009686_030--Hb_143766_050 Hb_002686_020 Hb_002686_020 Hb_009686_030--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_009686_030--Hb_001540_010 Hb_019253_030 Hb_019253_030 Hb_009686_030--Hb_019253_030 Hb_002701_240 Hb_002701_240 Hb_156947_010--Hb_002701_240 Hb_004375_100 Hb_004375_100 Hb_156947_010--Hb_004375_100 Hb_001279_360 Hb_001279_360 Hb_156947_010--Hb_001279_360 Hb_010068_020 Hb_010068_020 Hb_156947_010--Hb_010068_020 Hb_156947_010--Hb_008878_030 Hb_000331_080 Hb_000331_080 Hb_008878_030--Hb_000331_080 Hb_003050_080 Hb_003050_080 Hb_008878_030--Hb_003050_080 Hb_008878_030--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_008878_030--Hb_000832_140 Hb_004048_110 Hb_004048_110 Hb_008878_030--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_008878_030--Hb_004837_140 Hb_143766_050--Hb_019253_030 Hb_003734_140 Hb_003734_140 Hb_143766_050--Hb_003734_140 Hb_002259_070 Hb_002259_070 Hb_143766_050--Hb_002259_070 Hb_006031_020 Hb_006031_020 Hb_143766_050--Hb_006031_020 Hb_012753_160 Hb_012753_160 Hb_143766_050--Hb_012753_160 Hb_002686_020--Hb_003050_080 Hb_002686_020--Hb_001540_010 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_001540_010--Hb_003050_080 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010 Hb_019253_030--Hb_002259_070 Hb_010261_060 Hb_010261_060 Hb_019253_030--Hb_010261_060 Hb_000574_160 Hb_000574_160 Hb_019253_030--Hb_000574_160 Hb_019253_030--Hb_001540_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5842 2.60015 6.18922 3.70006 9.84671 8.01479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2589 26.4314 12.7363 8.65383 4.51219

CAGE analysis