Hb_009687_010

Information

Type -
Description -
Location Contig9687: 4358-7463
Sequence    

Annotation

kegg
ID tcc:TCM_043963
description AAA-type ATPase family protein isoform 1
nr
ID XP_012074640.1
description PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
swissprot
ID Q9ZNT0
description Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1
trembl
ID A0A067KLH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10324 PE=3 SV=1
Gene Ontology
ID GO:0005524
description vacuolar protein sorting-associated protein 4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63924: 5000-7442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009687_010 0.0 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
2 Hb_000103_270 0.0828206066 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
3 Hb_005914_010 0.0957048189 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
4 Hb_105602_010 0.0997602878 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
5 Hb_002027_140 0.1079587045 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
6 Hb_006698_030 0.1080480876 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
7 Hb_000329_760 0.1097215415 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
8 Hb_003266_100 0.1097567026 - - Isomerase protein [Gossypium arboreum]
9 Hb_000210_120 0.1118787532 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
10 Hb_002814_070 0.1119560058 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
11 Hb_003098_020 0.1137504209 - - 40S ribosomal protein S5B [Hevea brasiliensis]
12 Hb_002197_050 0.1148037585 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
13 Hb_000181_050 0.1168890529 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
14 Hb_000015_030 0.1173636552 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
15 Hb_011671_440 0.117902696 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
16 Hb_002849_200 0.1191166611 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
17 Hb_005305_150 0.1208600011 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
18 Hb_001332_040 0.1231024804 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
19 Hb_000096_160 0.1233017121 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
20 Hb_000621_020 0.123562809 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009687_010 Hb_009687_010 Hb_000103_270 Hb_000103_270 Hb_009687_010--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_009687_010--Hb_005914_010 Hb_105602_010 Hb_105602_010 Hb_009687_010--Hb_105602_010 Hb_002027_140 Hb_002027_140 Hb_009687_010--Hb_002027_140 Hb_006698_030 Hb_006698_030 Hb_009687_010--Hb_006698_030 Hb_000329_760 Hb_000329_760 Hb_009687_010--Hb_000329_760 Hb_000210_120 Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_005914_170 Hb_005914_170 Hb_000103_270--Hb_005914_170 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020 Hb_004216_050 Hb_004216_050 Hb_005914_010--Hb_004216_050 Hb_005305_150 Hb_005305_150 Hb_005914_010--Hb_005305_150 Hb_000028_590 Hb_000028_590 Hb_005914_010--Hb_000028_590 Hb_011671_440 Hb_011671_440 Hb_005914_010--Hb_011671_440 Hb_000015_030 Hb_000015_030 Hb_005914_010--Hb_000015_030 Hb_004064_010 Hb_004064_010 Hb_105602_010--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_105602_010--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_105602_010--Hb_000103_270 Hb_006816_200 Hb_006816_200 Hb_002027_140--Hb_006816_200 Hb_109002_020 Hb_109002_020 Hb_002027_140--Hb_109002_020 Hb_002027_140--Hb_004064_010 Hb_006114_010 Hb_006114_010 Hb_002027_140--Hb_006114_010 Hb_002027_140--Hb_003266_100 Hb_006698_030--Hb_003098_020 Hb_006698_030--Hb_005914_010 Hb_006698_030--Hb_000015_030 Hb_006698_030--Hb_005305_150 Hb_000496_120 Hb_000496_120 Hb_006698_030--Hb_000496_120 Hb_002631_030 Hb_002631_030 Hb_000329_760--Hb_002631_030 Hb_001414_030 Hb_001414_030 Hb_000329_760--Hb_001414_030 Hb_012490_070 Hb_012490_070 Hb_000329_760--Hb_012490_070 Hb_001195_200 Hb_001195_200 Hb_000329_760--Hb_001195_200 Hb_000258_260 Hb_000258_260 Hb_000329_760--Hb_000258_260 Hb_002014_020 Hb_002014_020 Hb_000329_760--Hb_002014_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.496046 0.471175 0.567457 0.734727 0.737615 0.587584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35651 1.79946 0.947652 2.28125 0.525013

CAGE analysis