Hb_009687_020

Information

Type -
Description -
Location Contig9687: 7562-11007
Sequence    

Annotation

kegg
ID pop:POPTR_0475s00200g
description hypothetical protein
nr
ID KDP35842.1
description hypothetical protein JCGZ_10323 [Jatropha curcas]
swissprot
ID Q9C7Y2
description Multiple organellar RNA editing factor 5, mitochondrial OS=Arabidopsis thaliana GN=MORF5 PE=2 SV=1
trembl
ID A0A067KIA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10323 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009687_020 0.0 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
2 Hb_003171_030 0.0649238926 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
3 Hb_006198_130 0.0723762354 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
4 Hb_158092_100 0.0820042182 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
5 Hb_004055_160 0.083242132 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
6 Hb_001269_500 0.0854621748 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
7 Hb_000473_050 0.0927940639 - - chromatin regulatory protein sir2, putative [Ricinus communis]
8 Hb_006829_080 0.0950210783 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
9 Hb_000300_020 0.0960134131 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
10 Hb_000059_270 0.0967598414 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
11 Hb_126917_010 0.0978400747 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
12 Hb_002005_040 0.0994234177 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000816_200 0.0996634686 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
14 Hb_001723_030 0.0999691957 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
15 Hb_000579_040 0.1015033432 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
16 Hb_000684_430 0.111261386 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
17 Hb_032631_070 0.1118160432 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
18 Hb_000803_240 0.1121016675 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
19 Hb_002044_160 0.1131802879 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 1 [Jatropha curcas]
20 Hb_009288_040 0.1135714231 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]

Gene co-expression network

sample Hb_009687_020 Hb_009687_020 Hb_003171_030 Hb_003171_030 Hb_009687_020--Hb_003171_030 Hb_006198_130 Hb_006198_130 Hb_009687_020--Hb_006198_130 Hb_158092_100 Hb_158092_100 Hb_009687_020--Hb_158092_100 Hb_004055_160 Hb_004055_160 Hb_009687_020--Hb_004055_160 Hb_001269_500 Hb_001269_500 Hb_009687_020--Hb_001269_500 Hb_000473_050 Hb_000473_050 Hb_009687_020--Hb_000473_050 Hb_003171_030--Hb_006198_130 Hb_000059_270 Hb_000059_270 Hb_003171_030--Hb_000059_270 Hb_000816_200 Hb_000816_200 Hb_003171_030--Hb_000816_200 Hb_001723_030 Hb_001723_030 Hb_003171_030--Hb_001723_030 Hb_003171_030--Hb_001269_500 Hb_006198_130--Hb_000059_270 Hb_006198_130--Hb_001269_500 Hb_163950_070 Hb_163950_070 Hb_006198_130--Hb_163950_070 Hb_001220_050 Hb_001220_050 Hb_006198_130--Hb_001220_050 Hb_002044_160 Hb_002044_160 Hb_158092_100--Hb_002044_160 Hb_006420_010 Hb_006420_010 Hb_158092_100--Hb_006420_010 Hb_007904_060 Hb_007904_060 Hb_158092_100--Hb_007904_060 Hb_158092_100--Hb_000473_050 Hb_158092_100--Hb_004055_160 Hb_002005_040 Hb_002005_040 Hb_004055_160--Hb_002005_040 Hb_000684_430 Hb_000684_430 Hb_004055_160--Hb_000684_430 Hb_006829_080 Hb_006829_080 Hb_004055_160--Hb_006829_080 Hb_005116_100 Hb_005116_100 Hb_004055_160--Hb_005116_100 Hb_001348_090 Hb_001348_090 Hb_004055_160--Hb_001348_090 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_000264_280 Hb_000264_280 Hb_001269_500--Hb_000264_280 Hb_000473_050--Hb_006829_080 Hb_189003_060 Hb_189003_060 Hb_000473_050--Hb_189003_060 Hb_001959_060 Hb_001959_060 Hb_000473_050--Hb_001959_060 Hb_000473_050--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17326 1.30595 7.48529 5.30054 2.02011 1.58468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09765 2.14411 1.0912 2.40556 13.6476

CAGE analysis