Hb_009692_010

Information

Type -
Description -
Location Contig9692: 8028-10318
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0009507
description peptide chain release factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63926: 7954-10416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009692_010 0.0 - - -
2 Hb_001318_190 0.2414615663 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
3 Hb_091675_010 0.2483147866 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
4 Hb_002249_150 0.2564162551 - - -
5 Hb_009620_100 0.2625558307 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
6 Hb_000035_200 0.2634735416 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]
7 Hb_000172_510 0.2635034461 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
8 Hb_051997_020 0.2661154912 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
9 Hb_002675_090 0.2669479051 - - conserved hypothetical protein [Ricinus communis]
10 Hb_030736_060 0.2679886983 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
11 Hb_001554_010 0.2695368298 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_000270_510 0.2697752365 - - hypothetical protein CISIN_1g008173mg [Citrus sinensis]
13 Hb_001493_080 0.2699362579 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
14 Hb_002102_030 0.2704535114 - - -
15 Hb_029695_050 0.2732872674 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
16 Hb_000818_100 0.2740868053 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
17 Hb_006405_030 0.2743989629 - - hypothetical protein VITISV_043238 [Vitis vinifera]
18 Hb_000931_020 0.277255979 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
19 Hb_000116_150 0.2777239492 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
20 Hb_009222_070 0.2794597842 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009692_010 Hb_009692_010 Hb_001318_190 Hb_001318_190 Hb_009692_010--Hb_001318_190 Hb_091675_010 Hb_091675_010 Hb_009692_010--Hb_091675_010 Hb_002249_150 Hb_002249_150 Hb_009692_010--Hb_002249_150 Hb_009620_100 Hb_009620_100 Hb_009692_010--Hb_009620_100 Hb_000035_200 Hb_000035_200 Hb_009692_010--Hb_000035_200 Hb_000172_510 Hb_000172_510 Hb_009692_010--Hb_000172_510 Hb_001318_200 Hb_001318_200 Hb_001318_190--Hb_001318_200 Hb_000207_100 Hb_000207_100 Hb_001318_190--Hb_000207_100 Hb_000008_220 Hb_000008_220 Hb_001318_190--Hb_000008_220 Hb_009851_050 Hb_009851_050 Hb_001318_190--Hb_009851_050 Hb_000556_150 Hb_000556_150 Hb_001318_190--Hb_000556_150 Hb_181810_020 Hb_181810_020 Hb_001318_190--Hb_181810_020 Hb_000116_150 Hb_000116_150 Hb_091675_010--Hb_000116_150 Hb_001493_080 Hb_001493_080 Hb_091675_010--Hb_001493_080 Hb_009247_010 Hb_009247_010 Hb_091675_010--Hb_009247_010 Hb_068575_010 Hb_068575_010 Hb_091675_010--Hb_068575_010 Hb_000098_050 Hb_000098_050 Hb_091675_010--Hb_000098_050 Hb_000059_200 Hb_000059_200 Hb_091675_010--Hb_000059_200 Hb_000085_090 Hb_000085_090 Hb_002249_150--Hb_000085_090 Hb_000366_190 Hb_000366_190 Hb_002249_150--Hb_000366_190 Hb_000959_250 Hb_000959_250 Hb_002249_150--Hb_000959_250 Hb_000703_210 Hb_000703_210 Hb_002249_150--Hb_000703_210 Hb_030736_070 Hb_030736_070 Hb_002249_150--Hb_030736_070 Hb_006483_010 Hb_006483_010 Hb_002249_150--Hb_006483_010 Hb_000916_070 Hb_000916_070 Hb_009620_100--Hb_000916_070 Hb_000868_050 Hb_000868_050 Hb_009620_100--Hb_000868_050 Hb_000227_190 Hb_000227_190 Hb_009620_100--Hb_000227_190 Hb_051997_020 Hb_051997_020 Hb_009620_100--Hb_051997_020 Hb_026549_010 Hb_026549_010 Hb_009620_100--Hb_026549_010 Hb_000184_210 Hb_000184_210 Hb_009620_100--Hb_000184_210 Hb_000146_040 Hb_000146_040 Hb_000035_200--Hb_000146_040 Hb_000696_010 Hb_000696_010 Hb_000035_200--Hb_000696_010 Hb_131035_010 Hb_131035_010 Hb_000035_200--Hb_131035_010 Hb_001500_110 Hb_001500_110 Hb_000035_200--Hb_001500_110 Hb_000270_520 Hb_000270_520 Hb_000035_200--Hb_000270_520 Hb_004970_140 Hb_004970_140 Hb_000035_200--Hb_004970_140 Hb_002660_150 Hb_002660_150 Hb_000172_510--Hb_002660_150 Hb_001252_090 Hb_001252_090 Hb_000172_510--Hb_001252_090 Hb_000331_370 Hb_000331_370 Hb_000172_510--Hb_000331_370 Hb_000172_510--Hb_000146_040 Hb_000107_080 Hb_000107_080 Hb_000172_510--Hb_000107_080 Hb_000172_510--Hb_000035_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167997 0.421287 0.761969 1.17536 0.403033 0.620887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.239312 0 0.645919 0.194239 0

CAGE analysis