Hb_009693_010

Information

Type -
Description -
Location Contig9693: 63-2251
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25940g
description POPTRDRAFT_867573; hypothetical protein
nr
ID XP_012470226.1
description PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
swissprot
ID Q0WRY5
description Serine/threonine-protein kinase CDL1 OS=Arabidopsis thaliana GN=CDL1 PE=1 SV=1
trembl
ID I1JUR8
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0016772
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63933: 59-2316 , PASA_asmbl_63934: 59-556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009693_010 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
2 Hb_000880_040 0.067983667 - - -
3 Hb_001500_080 0.0922876334 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
4 Hb_003592_060 0.0954601761 - - hypothetical protein F383_11017 [Gossypium arboreum]
5 Hb_002851_070 0.0960871041 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
6 Hb_006266_010 0.1000551906 - - unnamed protein product [Vitis vinifera]
7 Hb_000365_440 0.1034412257 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
8 Hb_023771_030 0.1042509376 - - unnamed protein product [Vitis vinifera]
9 Hb_000260_750 0.1078845889 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
10 Hb_005050_030 0.1099227377 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
11 Hb_000947_010 0.1118693067 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_001244_070 0.1124541713 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
13 Hb_000934_240 0.1214768051 - - PREDICTED: peroxidase 13 [Jatropha curcas]
14 Hb_009102_010 0.1238566097 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004602_010 0.1279452381 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
16 Hb_000732_220 0.1333451219 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
17 Hb_004832_010 0.1347782766 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000152_120 0.1356830438 - - alpha-l-fucosidase, putative [Ricinus communis]
19 Hb_174168_010 0.1366404433 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
20 Hb_019570_010 0.1382304058 - - lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009693_010 Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_009693_010--Hb_000880_040 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_003592_060 Hb_003592_060 Hb_009693_010--Hb_003592_060 Hb_002851_070 Hb_002851_070 Hb_009693_010--Hb_002851_070 Hb_006266_010 Hb_006266_010 Hb_009693_010--Hb_006266_010 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_000880_040--Hb_002851_070 Hb_000934_240 Hb_000934_240 Hb_001500_080--Hb_000934_240 Hb_001500_080--Hb_000880_040 Hb_001500_080--Hb_000260_750 Hb_004832_010 Hb_004832_010 Hb_001500_080--Hb_004832_010 Hb_001500_080--Hb_002851_070 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_023771_030 Hb_023771_030 Hb_002851_070--Hb_023771_030 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_004446_060 Hb_004446_060 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130 Hb_006266_010--Hb_005743_010 Hb_006615_220 Hb_006615_220 Hb_006266_010--Hb_006615_220 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_006266_010--Hb_068804_070 Hb_004709_030 Hb_004709_030 Hb_000365_440--Hb_004709_030 Hb_000365_440--Hb_001244_070 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_019278_010 Hb_019278_010 Hb_000365_440--Hb_019278_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224415 3.04103 1.047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.30864 1.65365

CAGE analysis