Hb_009693_030

Information

Type -
Description -
Location Contig9693: 11474-22300
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8GX23
description Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63935: 10936-11071 , PASA_asmbl_63936: 21661-22262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009693_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000996_180 0.1209082813 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
3 Hb_003177_010 0.1338648124 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
4 Hb_089889_020 0.1357906387 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
5 Hb_001910_020 0.1438747149 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
6 Hb_107847_010 0.1443853396 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
7 Hb_073973_160 0.1485519535 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
8 Hb_101020_010 0.1494656128 - - -
9 Hb_000365_160 0.1539062174 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
10 Hb_004218_070 0.1599856894 - - annexin [Manihot esculenta]
11 Hb_000258_320 0.1612072036 - - -
12 Hb_000886_060 0.1617667907 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
13 Hb_063409_020 0.1623099293 - - Calcium-binding protein, putative [Ricinus communis]
14 Hb_035318_010 0.1655515024 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
15 Hb_009838_130 0.1671752443 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
16 Hb_004920_060 0.1680767475 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
17 Hb_001279_330 0.1681875289 - - Protein bem46, putative [Ricinus communis]
18 Hb_002267_090 0.1682737418 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
19 Hb_001052_040 0.1683429106 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
20 Hb_000152_670 0.1706622898 - - hypothetical protein VITISV_037603 [Vitis vinifera]

Gene co-expression network

sample Hb_009693_030 Hb_009693_030 Hb_000996_180 Hb_000996_180 Hb_009693_030--Hb_000996_180 Hb_003177_010 Hb_003177_010 Hb_009693_030--Hb_003177_010 Hb_089889_020 Hb_089889_020 Hb_009693_030--Hb_089889_020 Hb_001910_020 Hb_001910_020 Hb_009693_030--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_009693_030--Hb_107847_010 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_000996_180--Hb_107847_010 Hb_000996_180--Hb_089889_020 Hb_000152_670 Hb_000152_670 Hb_000996_180--Hb_000152_670 Hb_009838_130 Hb_009838_130 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180 Hb_162378_010 Hb_162378_010 Hb_003177_010--Hb_162378_010 Hb_002267_090 Hb_002267_090 Hb_003177_010--Hb_002267_090 Hb_001279_330 Hb_001279_330 Hb_003177_010--Hb_001279_330 Hb_000789_100 Hb_000789_100 Hb_003177_010--Hb_000789_100 Hb_000265_220 Hb_000265_220 Hb_003177_010--Hb_000265_220 Hb_089889_020--Hb_009838_130 Hb_007123_070 Hb_007123_070 Hb_089889_020--Hb_007123_070 Hb_089889_020--Hb_001910_020 Hb_089889_020--Hb_107847_010 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_152453_010 Hb_152453_010 Hb_001910_020--Hb_152453_010 Hb_003091_010 Hb_003091_010 Hb_001910_020--Hb_003091_010 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.4733 13.983 13.648 18.5332 37.717 30.5776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43168 6.89354 1.48038 2.28982 1.05879

CAGE analysis