Hb_009693_040

Information

Type -
Description -
Location Contig9693: 35561-35950
Sequence    

Annotation

kegg
ID brp:103863687
description serine/threonine-protein kinase At3g07070
nr
ID XP_009139686.1
description PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
swissprot
ID Q9M3D7
description Putative L-type lectin-domain containing receptor kinase I.4 OS=Arabidopsis thaliana GN=LECRK14 PE=3 SV=1
trembl
ID A0A0D3BZ23
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009693_040 0.0 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
2 Hb_007963_050 0.0067017 - - -
3 Hb_003607_030 0.0106166917 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
4 Hb_000953_150 0.072178991 - - -
5 Hb_000098_280 0.0788178944 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
6 Hb_080765_020 0.0929952741 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_046727_010 0.0961724531 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000926_220 0.1064990774 - - -
9 Hb_007008_020 0.1165193054 - - -
10 Hb_017836_010 0.1177142259 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
11 Hb_000100_050 0.1414304026 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_011978_010 0.1421636402 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
13 Hb_000375_380 0.1425201428 - - -
14 Hb_004324_380 0.1459666027 - - -
15 Hb_027393_020 0.1578160228 - - -
16 Hb_095413_040 0.1866697399 - - -
17 Hb_158990_010 0.2160692561 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000922_310 0.2308211289 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
19 Hb_002163_060 0.2360397405 - - -
20 Hb_002805_320 0.2481331379 - - -

Gene co-expression network

sample Hb_009693_040 Hb_009693_040 Hb_007963_050 Hb_007963_050 Hb_009693_040--Hb_007963_050 Hb_003607_030 Hb_003607_030 Hb_009693_040--Hb_003607_030 Hb_000953_150 Hb_000953_150 Hb_009693_040--Hb_000953_150 Hb_000098_280 Hb_000098_280 Hb_009693_040--Hb_000098_280 Hb_080765_020 Hb_080765_020 Hb_009693_040--Hb_080765_020 Hb_046727_010 Hb_046727_010 Hb_009693_040--Hb_046727_010 Hb_007963_050--Hb_003607_030 Hb_007963_050--Hb_000953_150 Hb_007963_050--Hb_000098_280 Hb_007963_050--Hb_080765_020 Hb_007963_050--Hb_046727_010 Hb_003607_030--Hb_000953_150 Hb_003607_030--Hb_000098_280 Hb_000926_220 Hb_000926_220 Hb_003607_030--Hb_000926_220 Hb_003607_030--Hb_080765_020 Hb_000953_150--Hb_000098_280 Hb_000953_150--Hb_080765_020 Hb_000953_150--Hb_046727_010 Hb_007008_020 Hb_007008_020 Hb_000953_150--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000953_150--Hb_000100_050 Hb_000098_280--Hb_080765_020 Hb_000098_280--Hb_046727_010 Hb_000098_280--Hb_007008_020 Hb_000098_280--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000098_280--Hb_011978_010 Hb_080765_020--Hb_046727_010 Hb_080765_020--Hb_007008_020 Hb_080765_020--Hb_000100_050 Hb_080765_020--Hb_011978_010 Hb_046727_010--Hb_007008_020 Hb_046727_010--Hb_000100_050 Hb_046727_010--Hb_011978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176371 0 0 0 0.0832147 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis