Hb_009701_010

Information

Type -
Description -
Location Contig9701: 3386-13001
Sequence    

Annotation

kegg
ID rcu:RCOM_0305430
description heavy metal cation transport atpase, putative (EC:3.6.3.5)
nr
ID XP_012066829.1
description PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
swissprot
ID Q9SZW4
description Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1
trembl
ID A0A067LDS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04570 PE=3 SV=1
Gene Ontology
ID GO:0016021
description inactive cadmium zinc-transporting atpase hma3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009701_010 0.0 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
2 Hb_002007_240 0.0966124951 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
3 Hb_004705_140 0.1007011542 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
4 Hb_011311_020 0.1089304739 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
5 Hb_000227_240 0.111332949 - - hypothetical protein JCGZ_02139 [Jatropha curcas]
6 Hb_000853_120 0.1139636901 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
7 Hb_009564_030 0.1145615061 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
8 Hb_000330_040 0.1218801186 - - PREDICTED: protein RER1B-like [Jatropha curcas]
9 Hb_093084_060 0.1218961351 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
10 Hb_002110_030 0.1246849771 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_002400_310 0.1247663924 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
12 Hb_012807_050 0.1273714344 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_134469_010 0.1294668006 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
14 Hb_002400_400 0.1301152562 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
15 Hb_003994_060 0.1358992793 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
16 Hb_073562_010 0.1359174336 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
17 Hb_000244_220 0.1371203225 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
18 Hb_008103_120 0.1374108858 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
19 Hb_000987_140 0.1385214839 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
20 Hb_004785_060 0.1399097296 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]

Gene co-expression network

sample Hb_009701_010 Hb_009701_010 Hb_002007_240 Hb_002007_240 Hb_009701_010--Hb_002007_240 Hb_004705_140 Hb_004705_140 Hb_009701_010--Hb_004705_140 Hb_011311_020 Hb_011311_020 Hb_009701_010--Hb_011311_020 Hb_000227_240 Hb_000227_240 Hb_009701_010--Hb_000227_240 Hb_000853_120 Hb_000853_120 Hb_009701_010--Hb_000853_120 Hb_009564_030 Hb_009564_030 Hb_009701_010--Hb_009564_030 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030 Hb_003994_060 Hb_003994_060 Hb_004705_140--Hb_003994_060 Hb_003609_020 Hb_003609_020 Hb_004705_140--Hb_003609_020 Hb_073562_010 Hb_073562_010 Hb_004705_140--Hb_073562_010 Hb_002435_110 Hb_002435_110 Hb_004705_140--Hb_002435_110 Hb_003929_130 Hb_003929_130 Hb_004705_140--Hb_003929_130 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_011311_020--Hb_073562_010 Hb_000987_140 Hb_000987_140 Hb_011311_020--Hb_000987_140 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_093084_060 Hb_093084_060 Hb_000227_240--Hb_093084_060 Hb_004785_060 Hb_004785_060 Hb_000227_240--Hb_004785_060 Hb_002400_310 Hb_002400_310 Hb_000227_240--Hb_002400_310 Hb_000179_130 Hb_000179_130 Hb_000227_240--Hb_000179_130 Hb_000260_270 Hb_000260_270 Hb_000227_240--Hb_000260_270 Hb_004545_140 Hb_004545_140 Hb_000227_240--Hb_004545_140 Hb_000976_040 Hb_000976_040 Hb_000853_120--Hb_000976_040 Hb_000853_120--Hb_002110_030 Hb_156850_070 Hb_156850_070 Hb_000853_120--Hb_156850_070 Hb_000836_270 Hb_000836_270 Hb_000853_120--Hb_000836_270 Hb_000244_220 Hb_000244_220 Hb_000853_120--Hb_000244_220 Hb_012807_050 Hb_012807_050 Hb_009564_030--Hb_012807_050 Hb_170487_020 Hb_170487_020 Hb_009564_030--Hb_170487_020 Hb_000229_020 Hb_000229_020 Hb_009564_030--Hb_000229_020 Hb_000322_150 Hb_000322_150 Hb_009564_030--Hb_000322_150 Hb_000592_090 Hb_000592_090 Hb_009564_030--Hb_000592_090 Hb_076693_020 Hb_076693_020 Hb_009564_030--Hb_076693_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.181 23.7727 2.35837 7.12079 13.3303 13.8766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.59749 13.2318 17.8087 21.4376 2.628

CAGE analysis