Hb_009707_030

Information

Type -
Description -
Location Contig9707: 73625-77144
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04760g
description hypothetical protein
nr
ID XP_012064950.1
description PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067L6T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05638 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63949: 73656-77142 , PASA_asmbl_63950: 75110-75272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009707_030 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
2 Hb_001545_070 0.1955774713 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001287_010 0.2052929565 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
4 Hb_007943_060 0.2057087606 - - Rop5 [Hevea brasiliensis]
5 Hb_117807_010 0.2243953395 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
6 Hb_000170_120 0.2281108796 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000008_400 0.2388108468 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
8 Hb_000487_120 0.2407881931 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000538_180 0.2422100533 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
10 Hb_001221_330 0.2467078657 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
11 Hb_022250_020 0.2510603651 - - PREDICTED: uncharacterized protein LOC105648703 [Jatropha curcas]
12 Hb_001310_090 0.2551165347 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
13 Hb_032202_150 0.2562245532 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR14 [Jatropha curcas]
14 Hb_004931_110 0.2565829266 - - inorganic phosphate transporter, putative [Ricinus communis]
15 Hb_000008_380 0.256631716 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000300_700 0.2611346792 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
17 Hb_002078_170 0.2653730996 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
18 Hb_009111_020 0.2691117444 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
19 Hb_012163_020 0.2709978578 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
20 Hb_007110_010 0.2773482298 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]

Gene co-expression network

sample Hb_009707_030 Hb_009707_030 Hb_001545_070 Hb_001545_070 Hb_009707_030--Hb_001545_070 Hb_001287_010 Hb_001287_010 Hb_009707_030--Hb_001287_010 Hb_007943_060 Hb_007943_060 Hb_009707_030--Hb_007943_060 Hb_117807_010 Hb_117807_010 Hb_009707_030--Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_009707_030--Hb_000170_120 Hb_000008_400 Hb_000008_400 Hb_009707_030--Hb_000008_400 Hb_001545_070--Hb_007943_060 Hb_000189_170 Hb_000189_170 Hb_001545_070--Hb_000189_170 Hb_022250_020 Hb_022250_020 Hb_001545_070--Hb_022250_020 Hb_001221_330 Hb_001221_330 Hb_001545_070--Hb_001221_330 Hb_000487_120 Hb_000487_120 Hb_001545_070--Hb_000487_120 Hb_001287_010--Hb_007943_060 Hb_002078_170 Hb_002078_170 Hb_001287_010--Hb_002078_170 Hb_001287_010--Hb_001545_070 Hb_002150_060 Hb_002150_060 Hb_001287_010--Hb_002150_060 Hb_000538_180 Hb_000538_180 Hb_001287_010--Hb_000538_180 Hb_032202_150 Hb_032202_150 Hb_007943_060--Hb_032202_150 Hb_000878_140 Hb_000878_140 Hb_007943_060--Hb_000878_140 Hb_007943_060--Hb_000487_120 Hb_117807_010--Hb_000170_120 Hb_012163_020 Hb_012163_020 Hb_117807_010--Hb_012163_020 Hb_000140_360 Hb_000140_360 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_000340_310 Hb_000340_310 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_000170_120--Hb_012163_020 Hb_003097_060 Hb_003097_060 Hb_000170_120--Hb_003097_060 Hb_002609_040 Hb_002609_040 Hb_000170_120--Hb_002609_040 Hb_005656_190 Hb_005656_190 Hb_000170_120--Hb_005656_190 Hb_000389_050 Hb_000389_050 Hb_000170_120--Hb_000389_050 Hb_000771_060 Hb_000771_060 Hb_000008_400--Hb_000771_060 Hb_000300_700 Hb_000300_700 Hb_000008_400--Hb_000300_700 Hb_154038_020 Hb_154038_020 Hb_000008_400--Hb_154038_020 Hb_065525_120 Hb_065525_120 Hb_000008_400--Hb_065525_120 Hb_004931_110 Hb_004931_110 Hb_000008_400--Hb_004931_110 Hb_000008_400--Hb_000815_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.147833 0.10568 4.99955 3.81363 0.0187945 0.0186138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.793535 3.39941 8.35868 0.910641 2.09057

CAGE analysis