Hb_009710_030

Information

Type -
Description -
Location Contig9710: 14005-24623
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009710_030 0.0 - - -
2 Hb_009615_180 0.2065874295 - - lipoic acid synthetase, putative [Ricinus communis]
3 Hb_011364_020 0.238229083 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
4 Hb_003226_190 0.2426493496 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
5 Hb_002783_150 0.243438261 - - cyclophilin [Hevea brasiliensis]
6 Hb_030959_010 0.2449146005 - - cullin, putative [Ricinus communis]
7 Hb_001546_010 0.2451681034 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000366_030 0.2463853181 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
9 Hb_000258_050 0.250196271 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
10 Hb_003142_010 0.2520240874 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
11 Hb_002311_260 0.2521254207 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
12 Hb_000189_450 0.2523547708 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
13 Hb_030131_010 0.2533871267 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
14 Hb_004785_080 0.2542122289 - - hypothetical protein POPTR_0005s21250g [Populus trichocarpa]
15 Hb_000601_040 0.2584591485 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
16 Hb_158560_010 0.2588997853 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
17 Hb_003207_030 0.2597327886 - - hypothetical protein VITISV_027754 [Vitis vinifera]
18 Hb_000629_070 0.2597474174 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
19 Hb_000836_060 0.2600734585 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
20 Hb_003687_250 0.2611953181 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009710_030 Hb_009710_030 Hb_009615_180 Hb_009615_180 Hb_009710_030--Hb_009615_180 Hb_011364_020 Hb_011364_020 Hb_009710_030--Hb_011364_020 Hb_003226_190 Hb_003226_190 Hb_009710_030--Hb_003226_190 Hb_002783_150 Hb_002783_150 Hb_009710_030--Hb_002783_150 Hb_030959_010 Hb_030959_010 Hb_009710_030--Hb_030959_010 Hb_001546_010 Hb_001546_010 Hb_009710_030--Hb_001546_010 Hb_009615_180--Hb_003226_190 Hb_000184_030 Hb_000184_030 Hb_009615_180--Hb_000184_030 Hb_009615_180--Hb_002783_150 Hb_001294_030 Hb_001294_030 Hb_009615_180--Hb_001294_030 Hb_126917_010 Hb_126917_010 Hb_009615_180--Hb_126917_010 Hb_000352_220 Hb_000352_220 Hb_009615_180--Hb_000352_220 Hb_023988_030 Hb_023988_030 Hb_011364_020--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_011364_020--Hb_009178_060 Hb_005571_010 Hb_005571_010 Hb_011364_020--Hb_005571_010 Hb_001421_090 Hb_001421_090 Hb_011364_020--Hb_001421_090 Hb_001105_100 Hb_001105_100 Hb_011364_020--Hb_001105_100 Hb_011364_020--Hb_030959_010 Hb_003226_190--Hb_000352_220 Hb_000495_080 Hb_000495_080 Hb_003226_190--Hb_000495_080 Hb_001405_080 Hb_001405_080 Hb_003226_190--Hb_001405_080 Hb_003124_120 Hb_003124_120 Hb_003226_190--Hb_003124_120 Hb_000640_260 Hb_000640_260 Hb_003226_190--Hb_000640_260 Hb_001080_030 Hb_001080_030 Hb_003226_190--Hb_001080_030 Hb_007904_040 Hb_007904_040 Hb_002783_150--Hb_007904_040 Hb_000032_400 Hb_000032_400 Hb_002783_150--Hb_000032_400 Hb_000500_050 Hb_000500_050 Hb_002783_150--Hb_000500_050 Hb_004672_020 Hb_004672_020 Hb_002783_150--Hb_004672_020 Hb_002085_080 Hb_002085_080 Hb_002783_150--Hb_002085_080 Hb_005116_140 Hb_005116_140 Hb_030959_010--Hb_005116_140 Hb_000120_860 Hb_000120_860 Hb_030959_010--Hb_000120_860 Hb_009252_010 Hb_009252_010 Hb_030959_010--Hb_009252_010 Hb_009674_050 Hb_009674_050 Hb_030959_010--Hb_009674_050 Hb_000417_170 Hb_000417_170 Hb_030959_010--Hb_000417_170 Hb_002611_010 Hb_002611_010 Hb_030959_010--Hb_002611_010 Hb_000836_060 Hb_000836_060 Hb_001546_010--Hb_000836_060 Hb_012707_040 Hb_012707_040 Hb_001546_010--Hb_012707_040 Hb_000768_150 Hb_000768_150 Hb_001546_010--Hb_000768_150 Hb_001621_100 Hb_001621_100 Hb_001546_010--Hb_001621_100 Hb_000601_040 Hb_000601_040 Hb_001546_010--Hb_000601_040 Hb_009803_020 Hb_009803_020 Hb_001546_010--Hb_009803_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148006 0.191963 0.0995422 0.428996 0 0.0980135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0971219 0.305334 0 0.25005 0.890006

CAGE analysis