Hb_009711_040

Information

Type -
Description -
Location Contig9711: 28637-30389
Sequence    

Annotation

kegg
ID rcu:RCOM_1122760
description hypothetical protein
nr
ID XP_012089407.1
description PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JIK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63955: 29037-29526 , PASA_asmbl_63956: 28923-29534 , PASA_asmbl_63957: 29599-29756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009711_040 0.0 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
2 Hb_000417_350 0.0779573239 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020805_110 0.088901136 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_000676_380 0.1056539701 - - cytochrome P450 family protein [Populus trichocarpa]
5 Hb_003171_070 0.1101275714 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
6 Hb_000306_050 0.110882394 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
7 Hb_003090_230 0.1138636792 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001856_150 0.1140005415 - - -
9 Hb_129637_010 0.1224448564 - - PREDICTED: alpha-mannosidase isoform X1 [Populus euphratica]
10 Hb_001596_030 0.1249020689 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
11 Hb_005333_120 0.1252039148 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
12 Hb_006314_020 0.1285325735 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
13 Hb_000230_160 0.1357905207 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
14 Hb_004875_040 0.1382189022 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
15 Hb_000380_210 0.141161245 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
16 Hb_000967_010 0.1437530497 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
17 Hb_118707_020 0.1444239225 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003435_070 0.1455847688 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
19 Hb_000676_130 0.1455910359 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
20 Hb_014865_010 0.1474929477 - - hypothetical protein PRUPE_ppa017366mg, partial [Prunus persica]

Gene co-expression network

sample Hb_009711_040 Hb_009711_040 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_020805_110 Hb_020805_110 Hb_009711_040--Hb_020805_110 Hb_000676_380 Hb_000676_380 Hb_009711_040--Hb_000676_380 Hb_003171_070 Hb_003171_070 Hb_009711_040--Hb_003171_070 Hb_000306_050 Hb_000306_050 Hb_009711_040--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_009711_040--Hb_003090_230 Hb_129637_010 Hb_129637_010 Hb_000417_350--Hb_129637_010 Hb_001053_110 Hb_001053_110 Hb_000417_350--Hb_001053_110 Hb_005333_120 Hb_005333_120 Hb_000417_350--Hb_005333_120 Hb_000417_350--Hb_000306_050 Hb_000417_350--Hb_003171_070 Hb_020805_110--Hb_000676_380 Hb_004875_040 Hb_004875_040 Hb_020805_110--Hb_004875_040 Hb_020805_110--Hb_000306_050 Hb_020805_110--Hb_003090_230 Hb_001856_150 Hb_001856_150 Hb_020805_110--Hb_001856_150 Hb_000676_380--Hb_003090_230 Hb_000676_380--Hb_003171_070 Hb_000676_380--Hb_001856_150 Hb_000676_380--Hb_004875_040 Hb_006314_020 Hb_006314_020 Hb_003171_070--Hb_006314_020 Hb_003171_070--Hb_001856_150 Hb_003371_040 Hb_003371_040 Hb_003171_070--Hb_003371_040 Hb_161346_010 Hb_161346_010 Hb_003171_070--Hb_161346_010 Hb_000429_030 Hb_000429_030 Hb_003171_070--Hb_000429_030 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250 Hb_000297_220 Hb_000297_220 Hb_000306_050--Hb_000297_220 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_003090_230--Hb_004875_040 Hb_003090_230--Hb_001596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0268398 2.3896 1.54976 11.8513 0.0772831 0.0237022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0969705 0.0882322 13.5303 0.293896

CAGE analysis