Hb_009711_060

Information

Type -
Description -
Location Contig9711: 39331-39651
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009711_060 0.0 - - -
2 Hb_151697_010 0.0002615192 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_183658_010 0.0013659228 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_002106_020 0.0043202496 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
5 Hb_000556_210 0.0069064863 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
6 Hb_001104_030 0.0069438748 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
7 Hb_004375_090 0.0102069296 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
8 Hb_002284_140 0.0120052558 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
9 Hb_004092_020 0.0124023389 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
10 Hb_141016_010 0.0136314831 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
11 Hb_000053_140 0.021977668 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006469_100 0.0221165424 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
13 Hb_000574_060 0.0236615181 - - hypothetical protein F775_19731 [Aegilops tauschii]
14 Hb_027802_030 0.0247243509 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
15 Hb_005663_020 0.0260532408 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
16 Hb_001645_080 0.0265816369 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
17 Hb_168078_010 0.0274163379 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
18 Hb_001488_170 0.028579373 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
19 Hb_003363_100 0.030443642 - - -
20 Hb_000760_090 0.032030888 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]

Gene co-expression network

sample Hb_009711_060 Hb_009711_060 Hb_151697_010 Hb_151697_010 Hb_009711_060--Hb_151697_010 Hb_183658_010 Hb_183658_010 Hb_009711_060--Hb_183658_010 Hb_002106_020 Hb_002106_020 Hb_009711_060--Hb_002106_020 Hb_000556_210 Hb_000556_210 Hb_009711_060--Hb_000556_210 Hb_001104_030 Hb_001104_030 Hb_009711_060--Hb_001104_030 Hb_004375_090 Hb_004375_090 Hb_009711_060--Hb_004375_090 Hb_151697_010--Hb_183658_010 Hb_151697_010--Hb_002106_020 Hb_151697_010--Hb_000556_210 Hb_151697_010--Hb_001104_030 Hb_151697_010--Hb_004375_090 Hb_183658_010--Hb_002106_020 Hb_183658_010--Hb_000556_210 Hb_183658_010--Hb_001104_030 Hb_002284_140 Hb_002284_140 Hb_183658_010--Hb_002284_140 Hb_002106_020--Hb_000556_210 Hb_002106_020--Hb_002284_140 Hb_004092_020 Hb_004092_020 Hb_002106_020--Hb_004092_020 Hb_000556_210--Hb_002284_140 Hb_000556_210--Hb_004092_020 Hb_001104_030--Hb_004375_090 Hb_141016_010 Hb_141016_010 Hb_001104_030--Hb_141016_010 Hb_001104_030--Hb_002106_020 Hb_004375_090--Hb_141016_010 Hb_004375_090--Hb_183658_010 Hb_006469_100 Hb_006469_100 Hb_004375_090--Hb_006469_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.91244 1.40823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis