Hb_009732_040

Information

Type -
Description -
Location Contig9732: 75173-76690
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04880g
description POPTRDRAFT_416944; hypothetical protein
nr
ID XP_002308027.2
description hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H9U0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04880g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63976: 75296-76656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009732_040 0.0 - - hypothetical protein POPTR_0006s04880g [Populus trichocarpa]
2 Hb_011139_010 0.1754112994 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_064122_010 0.1905912502 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
4 Hb_008727_030 0.195305833 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003789_020 0.1978812885 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
6 Hb_039096_010 0.1984477295 - - unknown [Populus trichocarpa]
7 Hb_182831_020 0.2000476066 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_005144_180 0.2032497606 - - PREDICTED: protein enabled homolog [Populus euphratica]
9 Hb_000676_380 0.2035816378 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_003435_070 0.2041128821 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
11 Hb_003090_230 0.2047162147 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000011_380 0.205156903 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
13 Hb_083845_010 0.2059131037 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
14 Hb_001775_130 0.2093931926 - - Prephenate dehydratase [Hevea brasiliensis]
15 Hb_003171_070 0.2142681503 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
16 Hb_030394_050 0.2168749501 - - lipid binding protein, putative [Ricinus communis]
17 Hb_001047_170 0.2193804548 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
18 Hb_161346_010 0.2198686507 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
19 Hb_002876_190 0.2218106495 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
20 Hb_009711_040 0.2227314756 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]

Gene co-expression network

sample Hb_009732_040 Hb_009732_040 Hb_011139_010 Hb_011139_010 Hb_009732_040--Hb_011139_010 Hb_064122_010 Hb_064122_010 Hb_009732_040--Hb_064122_010 Hb_008727_030 Hb_008727_030 Hb_009732_040--Hb_008727_030 Hb_003789_020 Hb_003789_020 Hb_009732_040--Hb_003789_020 Hb_039096_010 Hb_039096_010 Hb_009732_040--Hb_039096_010 Hb_182831_020 Hb_182831_020 Hb_009732_040--Hb_182831_020 Hb_011139_010--Hb_003789_020 Hb_011139_010--Hb_182831_020 Hb_011139_010--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_011139_010--Hb_030394_050 Hb_000676_380 Hb_000676_380 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010 Hb_001369_140 Hb_001369_140 Hb_064122_010--Hb_001369_140 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_003435_070 Hb_003435_070 Hb_008727_030--Hb_003435_070 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_003789_020--Hb_030394_050 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_003789_020--Hb_005144_180 Hb_002876_190 Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_039096_010--Hb_001775_130 Hb_113945_010 Hb_113945_010 Hb_039096_010--Hb_113945_010 Hb_000106_060 Hb_000106_060 Hb_039096_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_039096_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_039096_010--Hb_170861_010 Hb_182831_020--Hb_161346_010 Hb_003171_070 Hb_003171_070 Hb_182831_020--Hb_003171_070 Hb_131029_010 Hb_131029_010 Hb_182831_020--Hb_131029_010 Hb_182831_020--Hb_000676_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.497815 2.19997 2.38658 42.6159 0.119995 0.216991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0275249 5.82032 48.4336 4.87328

CAGE analysis