Hb_009736_010

Information

Type -
Description -
Location Contig9736: 16735-18048
Sequence    

Annotation

kegg
ID rcu:RCOM_0862800
description hypothetical protein
nr
ID XP_002522892.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SA73
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63980: 17610-18071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009736_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009545_020 0.1367163106 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]
3 Hb_004195_090 0.1524470984 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
4 Hb_031527_060 0.1613873096 - - glutamate decarboxylase, putative [Ricinus communis]
5 Hb_001170_010 0.1693347453 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_004724_450 0.1754796332 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
7 Hb_124315_030 0.1924657729 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
8 Hb_001318_290 0.1947503947 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_001341_200 0.195829872 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
10 Hb_000059_300 0.1959931723 - - caspase, putative [Ricinus communis]
11 Hb_003120_040 0.2048249169 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
12 Hb_032631_050 0.2058050794 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_003592_030 0.2064206468 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
14 Hb_001862_170 0.2090413437 - - zinc finger protein, putative [Ricinus communis]
15 Hb_030944_010 0.2131749691 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
16 Hb_000110_380 0.2167622281 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
17 Hb_001558_070 0.2213338096 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_000300_130 0.2214282096 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
19 Hb_001439_110 0.2234565404 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
20 Hb_029921_030 0.2242519726 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009736_010 Hb_009736_010 Hb_009545_020 Hb_009545_020 Hb_009736_010--Hb_009545_020 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_031527_060 Hb_031527_060 Hb_009736_010--Hb_031527_060 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_124315_030 Hb_124315_030 Hb_009736_010--Hb_124315_030 Hb_009545_020--Hb_031527_060 Hb_003120_040 Hb_003120_040 Hb_009545_020--Hb_003120_040 Hb_009545_020--Hb_124315_030 Hb_000853_060 Hb_000853_060 Hb_009545_020--Hb_000853_060 Hb_004965_060 Hb_004965_060 Hb_009545_020--Hb_004965_060 Hb_001341_200 Hb_001341_200 Hb_004195_090--Hb_001341_200 Hb_029584_090 Hb_029584_090 Hb_004195_090--Hb_029584_090 Hb_030944_010 Hb_030944_010 Hb_004195_090--Hb_030944_010 Hb_000059_300 Hb_000059_300 Hb_004195_090--Hb_000059_300 Hb_032631_050 Hb_032631_050 Hb_004195_090--Hb_032631_050 Hb_000645_210 Hb_000645_210 Hb_031527_060--Hb_000645_210 Hb_000928_040 Hb_000928_040 Hb_031527_060--Hb_000928_040 Hb_000300_130 Hb_000300_130 Hb_031527_060--Hb_000300_130 Hb_031527_060--Hb_003120_040 Hb_032225_030 Hb_032225_030 Hb_001170_010--Hb_032225_030 Hb_000110_380 Hb_000110_380 Hb_001170_010--Hb_000110_380 Hb_001170_010--Hb_004195_090 Hb_029921_030 Hb_029921_030 Hb_001170_010--Hb_029921_030 Hb_030982_060 Hb_030982_060 Hb_001170_010--Hb_030982_060 Hb_002835_340 Hb_002835_340 Hb_004724_450--Hb_002835_340 Hb_004724_450--Hb_000110_380 Hb_005408_070 Hb_005408_070 Hb_004724_450--Hb_005408_070 Hb_003592_030 Hb_003592_030 Hb_004724_450--Hb_003592_030 Hb_004724_450--Hb_001170_010 Hb_001113_030 Hb_001113_030 Hb_124315_030--Hb_001113_030 Hb_124315_030--Hb_003120_040 Hb_052764_080 Hb_052764_080 Hb_124315_030--Hb_052764_080 Hb_000608_020 Hb_000608_020 Hb_124315_030--Hb_000608_020 Hb_011716_050 Hb_011716_050 Hb_124315_030--Hb_011716_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.382423 7.69036 1.08545 8.3231 0.1299 0.118992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21654 4.78381 1.06423 11.5203 0.773693

CAGE analysis