Hb_009745_010

Information

Type -
Description -
Location Contig9745: 7119-14454
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11490g
description POPTRDRAFT_816437; glycosyl transferase family 2 family protein
nr
ID AFZ78583.1
description cellulose synthase-like protein [Populus tomentosa]
swissprot
ID Q9ZQB9
description Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1
trembl
ID L0ASJ1
description Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1
Gene Ontology
ID GO:0009506
description probable xyloglucan glycosyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63988: 14417-14639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009745_010 0.0 - - cellulose synthase-like protein [Populus tomentosa]
2 Hb_000196_010 0.0698652655 - - Patellin-5, putative [Ricinus communis]
3 Hb_000363_180 0.0755261672 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
4 Hb_002909_100 0.0936738615 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
5 Hb_001522_040 0.0937705678 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_052117_010 0.0988818676 - - kinase, putative [Ricinus communis]
7 Hb_001898_020 0.1039192927 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
8 Hb_000950_040 0.1066800575 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_000732_230 0.1133161977 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
10 Hb_002685_030 0.1307297884 - - PREDICTED: protein SMG7L [Jatropha curcas]
11 Hb_000230_470 0.1338886852 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
12 Hb_003912_080 0.1358246075 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_000320_270 0.1370609493 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
14 Hb_006949_060 0.1375528227 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_005016_020 0.1385835343 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_005408_100 0.1399086984 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
17 Hb_029748_020 0.1400766132 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001408_020 0.1403999966 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
19 Hb_001009_150 0.1408673 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
20 Hb_000100_210 0.1413357416 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009745_010 Hb_009745_010 Hb_000196_010 Hb_000196_010 Hb_009745_010--Hb_000196_010 Hb_000363_180 Hb_000363_180 Hb_009745_010--Hb_000363_180 Hb_002909_100 Hb_002909_100 Hb_009745_010--Hb_002909_100 Hb_001522_040 Hb_001522_040 Hb_009745_010--Hb_001522_040 Hb_052117_010 Hb_052117_010 Hb_009745_010--Hb_052117_010 Hb_001898_020 Hb_001898_020 Hb_009745_010--Hb_001898_020 Hb_000196_010--Hb_000363_180 Hb_000196_010--Hb_002909_100 Hb_000950_040 Hb_000950_040 Hb_000196_010--Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000196_010--Hb_000732_230 Hb_000196_010--Hb_052117_010 Hb_000363_180--Hb_000732_230 Hb_000363_180--Hb_000950_040 Hb_001195_420 Hb_001195_420 Hb_000363_180--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_000363_180--Hb_001009_150 Hb_000230_470 Hb_000230_470 Hb_002909_100--Hb_000230_470 Hb_003912_080 Hb_003912_080 Hb_002909_100--Hb_003912_080 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120 Hb_001522_040--Hb_052117_010 Hb_000100_210 Hb_000100_210 Hb_001522_040--Hb_000100_210 Hb_001522_040--Hb_001898_020 Hb_029748_020 Hb_029748_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_052117_010--Hb_001898_020 Hb_052117_010--Hb_000950_040 Hb_000997_340 Hb_000997_340 Hb_052117_010--Hb_000997_340 Hb_001446_060 Hb_001446_060 Hb_001898_020--Hb_001446_060 Hb_001898_020--Hb_000950_040 Hb_005016_020 Hb_005016_020 Hb_001898_020--Hb_005016_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99443 7.6299 5.74036 8.64053 1.15078 1.50299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260835 0.205252 0.685766 3.27383 4.39724

CAGE analysis