Hb_009767_040

Information

Type -
Description -
Location Contig9767: 36967-37913
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15160g
description hypothetical protein
nr
ID XP_011026407.1
description PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5G853
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15160g PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase yrzf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_040 0.0 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
2 Hb_000521_030 0.045260201 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
3 Hb_000193_130 0.0691716777 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002785_020 0.0723433433 - - PREDICTED: laccase-4-like [Jatropha curcas]
5 Hb_003788_030 0.0833439872 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_000327_350 0.0838957936 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
7 Hb_004449_100 0.0935900466 - - -
8 Hb_001935_200 0.0997903556 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
9 Hb_002757_040 0.1000783311 - - -
10 Hb_002734_020 0.1001284213 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
11 Hb_000816_090 0.1025307878 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
12 Hb_000487_350 0.1029692958 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000581_010 0.1032062419 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
14 Hb_002757_030 0.1050939456 - - unnamed protein product [Vitis vinifera]
15 Hb_057343_010 0.1061898596 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
16 Hb_009164_010 0.1066444746 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
17 Hb_027577_010 0.1094668963 - - PREDICTED: uncharacterized protein LOC104779928 [Camelina sativa]
18 Hb_000483_340 0.1103649587 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000684_190 0.1104761439 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
20 Hb_004884_040 0.110792129 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]

Gene co-expression network

sample Hb_009767_040 Hb_009767_040 Hb_000521_030 Hb_000521_030 Hb_009767_040--Hb_000521_030 Hb_000193_130 Hb_000193_130 Hb_009767_040--Hb_000193_130 Hb_002785_020 Hb_002785_020 Hb_009767_040--Hb_002785_020 Hb_003788_030 Hb_003788_030 Hb_009767_040--Hb_003788_030 Hb_000327_350 Hb_000327_350 Hb_009767_040--Hb_000327_350 Hb_004449_100 Hb_004449_100 Hb_009767_040--Hb_004449_100 Hb_000521_030--Hb_000327_350 Hb_002757_040 Hb_002757_040 Hb_000521_030--Hb_002757_040 Hb_000521_030--Hb_002785_020 Hb_000521_030--Hb_000193_130 Hb_000816_090 Hb_000816_090 Hb_000521_030--Hb_000816_090 Hb_057343_010 Hb_057343_010 Hb_000193_130--Hb_057343_010 Hb_000193_130--Hb_002785_020 Hb_000193_130--Hb_000327_350 Hb_000193_130--Hb_003788_030 Hb_000684_190 Hb_000684_190 Hb_002785_020--Hb_000684_190 Hb_000645_230 Hb_000645_230 Hb_002785_020--Hb_000645_230 Hb_002785_020--Hb_003788_030 Hb_002734_020 Hb_002734_020 Hb_002785_020--Hb_002734_020 Hb_001935_200 Hb_001935_200 Hb_002785_020--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_002785_020--Hb_000422_090 Hb_003788_030--Hb_001935_200 Hb_003788_030--Hb_000684_190 Hb_003788_030--Hb_000422_090 Hb_000696_130 Hb_000696_130 Hb_003788_030--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_003788_030--Hb_002636_170 Hb_000327_350--Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_000327_350--Hb_003060_020 Hb_003528_090 Hb_003528_090 Hb_000327_350--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_004449_100--Hb_057343_010 Hb_004449_100--Hb_000193_130 Hb_001141_260 Hb_001141_260 Hb_004449_100--Hb_001141_260 Hb_004449_100--Hb_000521_030 Hb_025557_080 Hb_025557_080 Hb_004449_100--Hb_025557_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02993 0.449587 58.4684 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.127075 0 0.106944 10.1728

CAGE analysis