Hb_009767_090

Information

Type -
Description -
Location Contig9767: 77047-78282
Sequence    

Annotation

kegg
ID rcu:RCOM_0912150
description hypothetical protein
nr
ID XP_002517138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZVZ9
description Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana GN=PSB27-2 PE=1 SV=1
trembl
ID B9RTR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0912150 PE=3 SV=1
Gene Ontology
ID GO:0006098
description photosystem ii d1 precursor processing protein psb27- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64122: 77003-78284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000640_320 0.1209854351 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
3 Hb_000058_040 0.1234368817 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
4 Hb_000540_150 0.1275543631 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
5 Hb_005237_060 0.1315938273 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
6 Hb_028707_090 0.1321803702 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
7 Hb_002043_170 0.1324659166 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_005829_010 0.1327428536 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
9 Hb_000540_140 0.1330358864 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_000523_090 0.1337983222 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
11 Hb_108216_040 0.1342373947 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
12 Hb_004195_280 0.1346162723 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
13 Hb_002276_050 0.1349114229 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
14 Hb_004635_080 0.1351671628 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_073171_080 0.1355367552 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
16 Hb_000088_200 0.1357847345 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_005488_060 0.1361337608 - - cytochrome P450, putative [Ricinus communis]
18 Hb_008143_030 0.1366974283 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
19 Hb_000236_280 0.1368548203 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
20 Hb_003006_060 0.1380914377 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]

Gene co-expression network

sample Hb_009767_090 Hb_009767_090 Hb_000640_320 Hb_000640_320 Hb_009767_090--Hb_000640_320 Hb_000058_040 Hb_000058_040 Hb_009767_090--Hb_000058_040 Hb_000540_150 Hb_000540_150 Hb_009767_090--Hb_000540_150 Hb_005237_060 Hb_005237_060 Hb_009767_090--Hb_005237_060 Hb_028707_090 Hb_028707_090 Hb_009767_090--Hb_028707_090 Hb_002043_170 Hb_002043_170 Hb_009767_090--Hb_002043_170 Hb_000640_320--Hb_002043_170 Hb_108216_040 Hb_108216_040 Hb_000640_320--Hb_108216_040 Hb_008143_030 Hb_008143_030 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_002400_180 Hb_002400_180 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_000529_080 Hb_000529_080 Hb_000058_040--Hb_000529_080 Hb_004450_060 Hb_004450_060 Hb_000058_040--Hb_004450_060 Hb_000088_200 Hb_000088_200 Hb_000058_040--Hb_000088_200 Hb_003467_010 Hb_003467_010 Hb_000058_040--Hb_003467_010 Hb_001663_110 Hb_001663_110 Hb_000058_040--Hb_001663_110 Hb_000058_040--Hb_005237_060 Hb_007380_080 Hb_007380_080 Hb_000540_150--Hb_007380_080 Hb_000866_470 Hb_000866_470 Hb_000540_150--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_000540_150--Hb_000358_250 Hb_001863_260 Hb_001863_260 Hb_000540_150--Hb_001863_260 Hb_002942_080 Hb_002942_080 Hb_000540_150--Hb_002942_080 Hb_000429_200 Hb_000429_200 Hb_000540_150--Hb_000429_200 Hb_000684_420 Hb_000684_420 Hb_005237_060--Hb_000684_420 Hb_073171_080 Hb_073171_080 Hb_005237_060--Hb_073171_080 Hb_005701_040 Hb_005701_040 Hb_005237_060--Hb_005701_040 Hb_012305_070 Hb_012305_070 Hb_005237_060--Hb_012305_070 Hb_005237_060--Hb_000088_200 Hb_000236_280 Hb_000236_280 Hb_005237_060--Hb_000236_280 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_028707_090--Hb_008143_030 Hb_001437_100 Hb_001437_100 Hb_002043_170--Hb_001437_100 Hb_046615_020 Hb_046615_020 Hb_002043_170--Hb_046615_020 Hb_002883_010 Hb_002883_010 Hb_002043_170--Hb_002883_010 Hb_000035_040 Hb_000035_040 Hb_002043_170--Hb_000035_040 Hb_000335_010 Hb_000335_010 Hb_002043_170--Hb_000335_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.815 17.9186 20.1493 6.13277 75.8987 64.1573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.6371 25.4393 13.0953 10.0388 38.059

CAGE analysis