Hb_009767_100

Information

Type -
Description -
Location Contig9767: 90658-95081
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15290g
description POPTRDRAFT_419249; hydroxyproline-rich glycoprotein
nr
ID XP_012069629.1
description PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
swissprot
ID Q9LUV4
description FRIGIDA-like protein 4a OS=Arabidopsis thaliana GN=FRL4A PE=2 SV=1
trembl
ID A0A067L6Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02173 PE=4 SV=1
Gene Ontology
ID GO:0005840
description frigida-like protein 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64130: 90950-94999 , PASA_asmbl_64131: 91911-92778 , PASA_asmbl_64132: 93898-94105
cDNA
(Sanger)
(ID:Location)		 013_P14.ab1: 91209-91813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_100 0.0 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
2 Hb_001005_190 0.0525984796 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
3 Hb_005288_010 0.0625928094 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000859_060 0.0695919206 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
5 Hb_003055_060 0.0757331913 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
6 Hb_012055_060 0.0799746247 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
7 Hb_000189_560 0.081012175 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
8 Hb_008511_090 0.0811206975 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
9 Hb_000538_270 0.0842585698 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
10 Hb_011491_010 0.0871836589 - - Protein YME1, putative [Ricinus communis]
11 Hb_000983_090 0.0910554337 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
12 Hb_007163_120 0.0932116092 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
13 Hb_004355_020 0.0934191318 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
14 Hb_004785_060 0.0938472851 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
15 Hb_000322_150 0.0956204159 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
16 Hb_011218_040 0.0971398302 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
17 Hb_000085_100 0.0976750051 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
18 Hb_166236_010 0.0986002593 - - -
19 Hb_000567_210 0.0988899737 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
20 Hb_002411_030 0.1000849393 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]

Gene co-expression network

sample Hb_009767_100 Hb_009767_100 Hb_001005_190 Hb_001005_190 Hb_009767_100--Hb_001005_190 Hb_005288_010 Hb_005288_010 Hb_009767_100--Hb_005288_010 Hb_000859_060 Hb_000859_060 Hb_009767_100--Hb_000859_060 Hb_003055_060 Hb_003055_060 Hb_009767_100--Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560 Hb_011491_010 Hb_011491_010 Hb_001005_190--Hb_011491_010 Hb_000538_270 Hb_000538_270 Hb_001005_190--Hb_000538_270 Hb_007163_120 Hb_007163_120 Hb_001005_190--Hb_007163_120 Hb_001005_190--Hb_005288_010 Hb_008511_090 Hb_008511_090 Hb_001005_190--Hb_008511_090 Hb_000322_150 Hb_000322_150 Hb_005288_010--Hb_000322_150 Hb_000363_400 Hb_000363_400 Hb_005288_010--Hb_000363_400 Hb_005288_010--Hb_003055_060 Hb_002872_040 Hb_002872_040 Hb_005288_010--Hb_002872_040 Hb_004785_060 Hb_004785_060 Hb_000859_060--Hb_004785_060 Hb_000085_100 Hb_000085_100 Hb_000859_060--Hb_000085_100 Hb_000000_370 Hb_000000_370 Hb_000859_060--Hb_000000_370 Hb_001178_140 Hb_001178_140 Hb_000859_060--Hb_001178_140 Hb_004355_020 Hb_004355_020 Hb_000859_060--Hb_004355_020 Hb_003055_060--Hb_012055_060 Hb_000243_250 Hb_000243_250 Hb_003055_060--Hb_000243_250 Hb_003055_060--Hb_011491_010 Hb_003055_060--Hb_001005_190 Hb_012055_060--Hb_000243_250 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_012055_060--Hb_001005_190 Hb_012055_060--Hb_011491_010 Hb_012055_060--Hb_008511_090 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_000189_560--Hb_004355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
232.477 291.05 116.515 105.597 144.27 133.586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.297 190.474 199.543 169.435 64.7419

CAGE analysis