Hb_009767_110

Information

Type -
Description -
Location Contig9767: 96173-101429
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64136: 99397-99730 , PASA_asmbl_64138: 99811-100712 , PASA_asmbl_64140: 96411-103528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_110 0.0 - - -
2 Hb_044728_010 0.043923222 - - -
3 Hb_006649_050 0.0518462673 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
4 Hb_001198_100 0.0545970284 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
5 Hb_002725_120 0.0565735686 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
6 Hb_008554_130 0.0594607367 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
7 Hb_000684_470 0.0604105622 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
8 Hb_002110_150 0.0620887602 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_002046_180 0.0643009935 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
10 Hb_000107_330 0.0645849403 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
11 Hb_000028_480 0.0664093767 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
12 Hb_005463_100 0.0664903093 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
13 Hb_005779_060 0.0666266679 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
14 Hb_000165_250 0.0668540082 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
15 Hb_005496_130 0.0675886848 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
16 Hb_000092_170 0.0682064792 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_015934_040 0.0683793949 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
18 Hb_000329_710 0.0687829496 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
19 Hb_010618_010 0.0701597231 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
20 Hb_002739_100 0.0702435796 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009767_110 Hb_009767_110 Hb_044728_010 Hb_044728_010 Hb_009767_110--Hb_044728_010 Hb_006649_050 Hb_006649_050 Hb_009767_110--Hb_006649_050 Hb_001198_100 Hb_001198_100 Hb_009767_110--Hb_001198_100 Hb_002725_120 Hb_002725_120 Hb_009767_110--Hb_002725_120 Hb_008554_130 Hb_008554_130 Hb_009767_110--Hb_008554_130 Hb_000684_470 Hb_000684_470 Hb_009767_110--Hb_000684_470 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_006649_050--Hb_001198_100 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_002725_120--Hb_000165_250 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_008554_130--Hb_005496_130 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_156279_020 Hb_156279_020 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.36556 4.96747 3.09049 3.90788 5.47984 6.62337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.55034 7.07385 7.7483 4.57842 5.84041

CAGE analysis