Hb_009767_120

Information

Type -
Description -
Location Contig9767: 101734-104290
Sequence    

Annotation

kegg
ID rcu:RCOM_0911990
description prefoldin subunit, putative
nr
ID XP_012069635.1
description PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
swissprot
ID Q9LJ98
description Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1
trembl
ID A0A067L7X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02177 PE=4 SV=1
Gene Ontology
ID GO:0016272
description probable prefoldin subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64134: 102498-104191 , PASA_asmbl_64140: 96411-103528
cDNA
(Sanger)
(ID:Location)		 024_A18.ab1: 102506-104101

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009767_120 0.0 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
2 Hb_000933_180 0.0551941852 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
3 Hb_003874_020 0.062307969 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
4 Hb_000690_080 0.0666411419 transcription factor TF Family: HB -
5 Hb_011360_140 0.0683461178 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_011828_050 0.0686275626 - - 40S ribosomal protein S23, putative [Ricinus communis]
7 Hb_001369_650 0.069317054 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
8 Hb_004440_050 0.0718703599 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
9 Hb_010128_130 0.0755752773 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
10 Hb_002477_240 0.0762382232 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
11 Hb_125000_010 0.0763693941 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
12 Hb_000473_040 0.0767838869 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
13 Hb_000019_230 0.0779025873 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
14 Hb_003878_190 0.077929679 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
15 Hb_003551_020 0.0783427667 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
16 Hb_118419_020 0.0789180186 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
17 Hb_010436_070 0.0792854161 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
18 Hb_000742_140 0.0794329049 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003038_030 0.080360381 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
20 Hb_000494_020 0.0808760341 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]

Gene co-expression network

sample Hb_009767_120 Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_009767_120--Hb_000933_180 Hb_003874_020 Hb_003874_020 Hb_009767_120--Hb_003874_020 Hb_000690_080 Hb_000690_080 Hb_009767_120--Hb_000690_080 Hb_011360_140 Hb_011360_140 Hb_009767_120--Hb_011360_140 Hb_011828_050 Hb_011828_050 Hb_009767_120--Hb_011828_050 Hb_001369_650 Hb_001369_650 Hb_009767_120--Hb_001369_650 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_002233_150 Hb_002233_150 Hb_000933_180--Hb_002233_150 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_003874_020--Hb_000690_080 Hb_000690_080--Hb_004944_010 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000690_080--Hb_000107_050 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_043302_010 Hb_043302_010 Hb_011828_050--Hb_043302_010 Hb_003746_040 Hb_003746_040 Hb_011828_050--Hb_003746_040 Hb_011828_050--Hb_004944_010 Hb_000742_140 Hb_000742_140 Hb_011828_050--Hb_000742_140 Hb_011828_050--Hb_003874_020 Hb_000392_270 Hb_000392_270 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_001369_650--Hb_011360_140 Hb_003001_060 Hb_003001_060 Hb_001369_650--Hb_003001_060 Hb_000977_080 Hb_000977_080 Hb_001369_650--Hb_000977_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.321 29.2618 33.2406 37.7678 95.9011 120.393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.0822 146.54 56.8745 30.5315 18.999

CAGE analysis