Hb_009771_040

Information

Type -
Description -
Location Contig9771: 54806-58959
Sequence    

Annotation

kegg
ID cmo:103486311
description auxin transporter-like protein 2
nr
ID KDP24475.1
description hypothetical protein JCGZ_25039 [Jatropha curcas]
swissprot
ID Q9FEL7
description Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1
trembl
ID A0A067JWT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25039 PE=4 SV=1
Gene Ontology
ID GO:0005768
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64190: 54829-59008 , PASA_asmbl_64191: 58043-58422
cDNA
(Sanger)
(ID:Location)		 019_C20.ab1: 54858-55439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_040 0.0 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
2 Hb_002168_070 0.059634713 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
3 Hb_026050_010 0.071768771 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_002250_140 0.073174485 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
5 Hb_000258_230 0.0789783635 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000434_060 0.0845139805 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_173107_020 0.085242892 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
8 Hb_001405_170 0.0860964034 - - aspartyl protease family protein [Populus trichocarpa]
9 Hb_002043_070 0.0866454759 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
10 Hb_000045_080 0.0940705448 - - amino acid transporter, putative [Ricinus communis]
11 Hb_002053_190 0.0942776285 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
12 Hb_007103_020 0.0988852499 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
13 Hb_002960_030 0.1019184207 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
14 Hb_000270_750 0.1047545797 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
15 Hb_010174_200 0.1063434786 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
16 Hb_008598_010 0.1068106886 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
17 Hb_000201_010 0.1089334296 - - unnamed protein product [Vitis vinifera]
18 Hb_005211_210 0.1089733167 - - lysine and histidine specific transporter family protein [Populus trichocarpa]
19 Hb_017862_030 0.1093578412 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
20 Hb_000983_130 0.1096919453 - - transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009771_040 Hb_009771_040 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_026050_010 Hb_026050_010 Hb_009771_040--Hb_026050_010 Hb_002250_140 Hb_002250_140 Hb_009771_040--Hb_002250_140 Hb_000258_230 Hb_000258_230 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002043_070 Hb_002043_070 Hb_002168_070--Hb_002043_070 Hb_002168_070--Hb_000434_060 Hb_002053_190 Hb_002053_190 Hb_002168_070--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002168_070--Hb_001405_170 Hb_005211_210 Hb_005211_210 Hb_002168_070--Hb_005211_210 Hb_026050_010--Hb_002250_140 Hb_000574_230 Hb_000574_230 Hb_026050_010--Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_026050_010--Hb_007257_070 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_026050_010--Hb_000258_230 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_000434_060--Hb_005211_210 Hb_000434_060--Hb_002043_070 Hb_005051_010 Hb_005051_010 Hb_000434_060--Hb_005051_010 Hb_007221_040 Hb_007221_040 Hb_000434_060--Hb_007221_040 Hb_000384_020 Hb_000384_020 Hb_173107_020--Hb_000384_020 Hb_114733_010 Hb_114733_010 Hb_173107_020--Hb_114733_010 Hb_000991_080 Hb_000991_080 Hb_173107_020--Hb_000991_080 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0894964 22.1344 11.4974 38.0164 0.0329004 0.0608088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0189611 0.0149199 0 2.69709 23.0209

CAGE analysis