Hb_009771_060

Information

Type -
Description -
Location Contig9771: 77067-78041
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12110g
description POPTRDRAFT_825331; PLASTID-SPECIFIC RIBOSOMAL protein 4
nr
ID XP_011047434.1
description PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
swissprot
ID O80439
description 30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1
trembl
ID B9IG72
description PLASTID-SPECIFIC RIBOSOMAL protein 4 OS=Populus trichocarpa GN=POPTR_0016s12110g PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64193: 77182-77932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_060 0.0 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
2 Hb_003077_150 0.1051656318 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_007263_010 0.1079666546 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_002194_050 0.1115974527 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
5 Hb_005332_080 0.1137853747 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
6 Hb_007451_040 0.1161879644 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
7 Hb_000152_180 0.1206534273 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
8 Hb_008375_030 0.1225957949 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
9 Hb_000975_240 0.1233682757 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
10 Hb_000905_120 0.1266995872 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
11 Hb_001541_110 0.129413072 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_004994_080 0.1323820121 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_004129_090 0.1332842206 - - PREDICTED: uncharacterized protein LOC105646039 [Jatropha curcas]
14 Hb_011476_030 0.1367536862 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
15 Hb_007217_010 0.1375216606 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
16 Hb_000312_070 0.1385660433 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014497_100 0.1391021552 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_000392_450 0.1415242233 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
19 Hb_000574_470 0.1455255179 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_005217_030 0.1463317726 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]

Gene co-expression network

sample Hb_009771_060 Hb_009771_060 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_007263_010 Hb_007263_010 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_005332_080 Hb_005332_080 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_000152_180 Hb_000152_180 Hb_009771_060--Hb_000152_180 Hb_001329_090 Hb_001329_090 Hb_003077_150--Hb_001329_090 Hb_000905_120 Hb_000905_120 Hb_003077_150--Hb_000905_120 Hb_000413_060 Hb_000413_060 Hb_003077_150--Hb_000413_060 Hb_000975_240 Hb_000975_240 Hb_003077_150--Hb_000975_240 Hb_003556_030 Hb_003556_030 Hb_003077_150--Hb_003556_030 Hb_007263_010--Hb_007451_040 Hb_004994_080 Hb_004994_080 Hb_007263_010--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_006555_040 Hb_006555_040 Hb_007263_010--Hb_006555_040 Hb_011386_050 Hb_011386_050 Hb_007263_010--Hb_011386_050 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_000537_100 Hb_000537_100 Hb_005332_080--Hb_000537_100 Hb_000318_220 Hb_000318_220 Hb_005332_080--Hb_000318_220 Hb_029622_120 Hb_029622_120 Hb_005332_080--Hb_029622_120 Hb_002871_040 Hb_002871_040 Hb_005332_080--Hb_002871_040 Hb_002218_020 Hb_002218_020 Hb_005332_080--Hb_002218_020 Hb_021576_150 Hb_021576_150 Hb_005332_080--Hb_021576_150 Hb_001541_110 Hb_001541_110 Hb_007451_040--Hb_001541_110 Hb_007451_040--Hb_004994_080 Hb_000140_440 Hb_000140_440 Hb_007451_040--Hb_000140_440 Hb_007451_040--Hb_006555_040 Hb_005162_110 Hb_005162_110 Hb_007451_040--Hb_005162_110 Hb_000312_070 Hb_000312_070 Hb_000152_180--Hb_000312_070 Hb_011476_030 Hb_011476_030 Hb_000152_180--Hb_011476_030 Hb_000152_180--Hb_005332_080 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2025 20.1139 82.9496 14.9483 8.63483 10.6099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1314 26.1242 8.11707 10.0793 31.2145

CAGE analysis