Hb_009771_100

Information

Type -
Description -
Location Contig9771: 91664-94383
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10010g
description POPTRDRAFT_819208; hypothetical protein
nr
ID XP_011047441.1
description PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
swissprot
ID P09794
description Alpha-amylase OS=Streptomyces limosus GN=aml PE=3 SV=1
trembl
ID A0A067JY40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25033 PE=4 SV=1
Gene Ontology
ID GO:0003824
description carbohydrate-binding-like isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64195: 91717-94366 , PASA_asmbl_64196: 91774-94348 , PASA_asmbl_64197: 91774-94014 , PASA_asmbl_64198: 93138-93927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_100 0.0 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
2 Hb_031711_010 0.065114114 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
3 Hb_009780_100 0.0710368559 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_011909_060 0.0729733311 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
5 Hb_001141_370 0.0773746149 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
6 Hb_000457_050 0.0817770613 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
7 Hb_000061_490 0.0820696925 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
8 Hb_001243_060 0.083162254 - - PREDICTED: probable magnesium transporter NIPA6 [Jatropha curcas]
9 Hb_007193_110 0.0894186173 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
10 Hb_000264_080 0.0908573717 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
11 Hb_000363_280 0.0920725141 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
12 Hb_000336_110 0.0920903451 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
13 Hb_000230_430 0.0935374078 - - catalytic, putative [Ricinus communis]
14 Hb_004410_070 0.0938287279 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
15 Hb_000120_420 0.0948478745 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
16 Hb_003373_040 0.0975602915 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
17 Hb_000034_160 0.0981532532 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
18 Hb_012114_050 0.0982621341 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
19 Hb_007017_070 0.0992993679 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_003682_030 0.1007851121 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]

Gene co-expression network

sample Hb_009771_100 Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_000061_490 Hb_000061_490 Hb_009771_100--Hb_000061_490 Hb_031711_010--Hb_011909_060 Hb_000230_430 Hb_000230_430 Hb_031711_010--Hb_000230_430 Hb_031711_010--Hb_000457_050 Hb_001243_060 Hb_001243_060 Hb_031711_010--Hb_001243_060 Hb_007193_110 Hb_007193_110 Hb_031711_010--Hb_007193_110 Hb_009780_100--Hb_001243_060 Hb_003633_070 Hb_003633_070 Hb_009780_100--Hb_003633_070 Hb_006615_120 Hb_006615_120 Hb_009780_100--Hb_006615_120 Hb_003117_020 Hb_003117_020 Hb_009780_100--Hb_003117_020 Hb_009780_100--Hb_000230_430 Hb_000363_280 Hb_000363_280 Hb_011909_060--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_011909_060--Hb_000120_420 Hb_011909_060--Hb_001141_370 Hb_002997_160 Hb_002997_160 Hb_011909_060--Hb_002997_160 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001141_370--Hb_001243_060 Hb_000340_110 Hb_000340_110 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_000061_490--Hb_009780_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.5178 147.621 63.833 48.7613 78.8128 63.4695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.3661 35.1952 33.3682 29.3944 25.4549

CAGE analysis