Hb_009775_020

Information

Type -
Description -
Location Contig9775: 16043-19672
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06380g
description Got1-like family protein
nr
ID XP_012066202.1
description PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
swissprot
ID Q20263
description Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=3 SV=2
trembl
ID B9MXZ3
description Got1-like family protein OS=Populus trichocarpa GN=POPTR_0017s06380g PE=4 SV=1
Gene Ontology
ID GO:0016192
description vesicle transport protein got1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64213: 16126-16243 , PASA_asmbl_64214: 16344-16554 , PASA_asmbl_64215: 16320-19644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009775_020 0.0 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
2 Hb_007059_010 0.0664077356 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
3 Hb_004310_150 0.0756907431 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
4 Hb_040262_010 0.083634683 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
5 Hb_005618_160 0.0840518237 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
6 Hb_010712_030 0.0862846285 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000960_060 0.0880361131 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
8 Hb_000152_380 0.0884169809 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_143395_010 0.0898859222 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
10 Hb_007317_110 0.0910144607 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
11 Hb_003030_070 0.0910906673 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_000796_210 0.0930514945 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004032_430 0.0936775587 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
14 Hb_012022_160 0.0937992139 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
15 Hb_066182_010 0.0938608345 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_000051_070 0.0942803643 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
17 Hb_001828_190 0.0943121688 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
18 Hb_054865_100 0.0944060363 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
19 Hb_001369_420 0.0947945263 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
20 Hb_001310_110 0.0949583749 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_009775_020 Hb_009775_020 Hb_007059_010 Hb_007059_010 Hb_009775_020--Hb_007059_010 Hb_004310_150 Hb_004310_150 Hb_009775_020--Hb_004310_150 Hb_040262_010 Hb_040262_010 Hb_009775_020--Hb_040262_010 Hb_005618_160 Hb_005618_160 Hb_009775_020--Hb_005618_160 Hb_010712_030 Hb_010712_030 Hb_009775_020--Hb_010712_030 Hb_000960_060 Hb_000960_060 Hb_009775_020--Hb_000960_060 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_002671_100 Hb_002671_100 Hb_040262_010--Hb_002671_100 Hb_040262_010--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_040262_010--Hb_001946_010 Hb_040262_010--Hb_007317_110 Hb_000260_170 Hb_000260_170 Hb_040262_010--Hb_000260_170 Hb_007594_130 Hb_007594_130 Hb_040262_010--Hb_007594_130 Hb_000174_110 Hb_000174_110 Hb_005618_160--Hb_000174_110 Hb_054865_100 Hb_054865_100 Hb_005618_160--Hb_054865_100 Hb_011970_030 Hb_011970_030 Hb_005618_160--Hb_011970_030 Hb_000462_140 Hb_000462_140 Hb_005618_160--Hb_000462_140 Hb_003010_030 Hb_003010_030 Hb_005618_160--Hb_003010_030 Hb_002495_040 Hb_002495_040 Hb_005618_160--Hb_002495_040 Hb_004310_020 Hb_004310_020 Hb_010712_030--Hb_004310_020 Hb_000099_080 Hb_000099_080 Hb_010712_030--Hb_000099_080 Hb_000125_130 Hb_000125_130 Hb_010712_030--Hb_000125_130 Hb_010712_030--Hb_000152_380 Hb_001408_040 Hb_001408_040 Hb_010712_030--Hb_001408_040 Hb_010712_030--Hb_007059_010 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000960_060--Hb_000093_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.8434 29.6894 29.3691 41.571 75.5015 58.8183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8342 55.1896 34.5938 30.1087 18.5468

CAGE analysis