Hb_009775_040

Information

Type -
Description -
Location Contig9775: 37380-38054
Sequence    

Annotation

kegg
ID vvi:100250733
description probable glutathione S-transferase parC
nr
ID XP_003634776.1
description PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID F6HR69
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0093g00110 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009775_040 0.0 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
2 Hb_006503_010 0.1820356117 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_006120_170 0.1823677328 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
4 Hb_143629_030 0.1949923744 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
5 Hb_000216_010 0.2083398834 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
6 Hb_000359_320 0.2202424343 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
7 Hb_004235_060 0.2307102032 - - phosphate transporter [Manihot esculenta]
8 Hb_000252_080 0.2436600874 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
9 Hb_007849_010 0.2547335115 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
10 Hb_010921_090 0.2550792045 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
11 Hb_020178_010 0.2556584701 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
12 Hb_001374_040 0.2645004043 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
13 Hb_001470_070 0.2655047642 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_000914_130 0.2693717713 - - copper-transporting atpase p-type, putative [Ricinus communis]
15 Hb_001922_100 0.2766370989 - - S-type anion channel SLAH2 [Triticum urartu]
16 Hb_009083_010 0.2772360323 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
17 Hb_002918_130 0.2790654375 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
18 Hb_002675_200 0.2833189967 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
19 Hb_000112_100 0.2862662826 - - glutamate receptor 2 plant, putative [Ricinus communis]
20 Hb_002301_200 0.2863455067 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]

Gene co-expression network

sample Hb_009775_040 Hb_009775_040 Hb_006503_010 Hb_006503_010 Hb_009775_040--Hb_006503_010 Hb_006120_170 Hb_006120_170 Hb_009775_040--Hb_006120_170 Hb_143629_030 Hb_143629_030 Hb_009775_040--Hb_143629_030 Hb_000216_010 Hb_000216_010 Hb_009775_040--Hb_000216_010 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_004235_060 Hb_004235_060 Hb_009775_040--Hb_004235_060 Hb_006503_010--Hb_000216_010 Hb_006503_010--Hb_143629_030 Hb_001470_070 Hb_001470_070 Hb_006503_010--Hb_001470_070 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_006120_170--Hb_004235_060 Hb_000252_080 Hb_000252_080 Hb_006120_170--Hb_000252_080 Hb_000914_130 Hb_000914_130 Hb_006120_170--Hb_000914_130 Hb_000752_020 Hb_000752_020 Hb_006120_170--Hb_000752_020 Hb_001374_040 Hb_001374_040 Hb_006120_170--Hb_001374_040 Hb_143629_030--Hb_000216_010 Hb_002301_200 Hb_002301_200 Hb_143629_030--Hb_002301_200 Hb_002211_040 Hb_002211_040 Hb_143629_030--Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_143629_030--Hb_002401_010 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_139569_010 Hb_139569_010 Hb_000216_010--Hb_139569_010 Hb_000216_010--Hb_001470_070 Hb_008948_060 Hb_008948_060 Hb_000359_320--Hb_008948_060 Hb_001318_290 Hb_001318_290 Hb_000359_320--Hb_001318_290 Hb_001227_020 Hb_001227_020 Hb_000359_320--Hb_001227_020 Hb_002236_070 Hb_002236_070 Hb_000359_320--Hb_002236_070 Hb_003938_010 Hb_003938_010 Hb_000359_320--Hb_003938_010 Hb_008695_130 Hb_008695_130 Hb_000359_320--Hb_008695_130 Hb_004235_060--Hb_000252_080 Hb_000347_020 Hb_000347_020 Hb_004235_060--Hb_000347_020 Hb_009083_010 Hb_009083_010 Hb_004235_060--Hb_009083_010 Hb_006615_160 Hb_006615_160 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.19619 0.110201 0.0520504 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0843714 0 0.104066 0

CAGE analysis