Hb_009775_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig9775: 39657-42684
Sequence    

Annotation

kegg
ID rcu:RCOM_0575190
description hypothetical protein
nr
ID XP_002529771.1
description hypothetical protein RCOM_0575190 [Ricinus communis]
swissprot
ID Q8RWD7
description Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana GN=EMB1674 PE=2 SV=1
trembl
ID B9SUV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0575190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64216: 39637-42569 , PASA_asmbl_64218: 40298-40938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009775_050 0.0 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
2 Hb_001329_230 0.086534362 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
3 Hb_009118_010 0.0873968426 - - methionine aminopeptidase, putative [Ricinus communis]
4 Hb_000268_020 0.0904331894 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002272_180 0.0913251634 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
6 Hb_001341_050 0.096046222 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
7 Hb_000076_120 0.1007173899 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
8 Hb_006663_100 0.1016132173 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
9 Hb_003673_060 0.1035061773 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
10 Hb_003602_040 0.1061249798 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000956_030 0.1072227137 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_061908_010 0.1072902085 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
13 Hb_000364_060 0.1076911215 - - JHL03K20.4 [Jatropha curcas]
14 Hb_002027_070 0.1087109133 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
15 Hb_000322_050 0.1087564427 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
16 Hb_000563_210 0.1089147536 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
17 Hb_002067_040 0.1132860272 - - dihydrodipicolinate reductase, putative [Ricinus communis]
18 Hb_009133_010 0.1136285555 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
19 Hb_000058_100 0.1137399284 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
20 Hb_171900_100 0.1137427404 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]

Gene co-expression network

sample Hb_009775_050 Hb_009775_050 Hb_001329_230 Hb_001329_230 Hb_009775_050--Hb_001329_230 Hb_009118_010 Hb_009118_010 Hb_009775_050--Hb_009118_010 Hb_000268_020 Hb_000268_020 Hb_009775_050--Hb_000268_020 Hb_002272_180 Hb_002272_180 Hb_009775_050--Hb_002272_180 Hb_001341_050 Hb_001341_050 Hb_009775_050--Hb_001341_050 Hb_000076_120 Hb_000076_120 Hb_009775_050--Hb_000076_120 Hb_003602_040 Hb_003602_040 Hb_001329_230--Hb_003602_040 Hb_006663_100 Hb_006663_100 Hb_001329_230--Hb_006663_100 Hb_076787_010 Hb_076787_010 Hb_001329_230--Hb_076787_010 Hb_022137_060 Hb_022137_060 Hb_001329_230--Hb_022137_060 Hb_001329_230--Hb_009118_010 Hb_009118_010--Hb_003602_040 Hb_004608_020 Hb_004608_020 Hb_009118_010--Hb_004608_020 Hb_000012_090 Hb_000012_090 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030 Hb_000268_020--Hb_001329_230 Hb_002027_070 Hb_002027_070 Hb_000268_020--Hb_002027_070 Hb_000627_030 Hb_000627_030 Hb_000268_020--Hb_000627_030 Hb_003673_060 Hb_003673_060 Hb_000268_020--Hb_003673_060 Hb_002301_280 Hb_002301_280 Hb_000268_020--Hb_002301_280 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_007668_040 Hb_007668_040 Hb_001341_050--Hb_007668_040 Hb_001341_050--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_000058_100 Hb_000058_100 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_004310_130 Hb_004310_130 Hb_000076_120--Hb_004310_130 Hb_000053_130 Hb_000053_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_007218_080 Hb_007218_080 Hb_000076_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.626 3.7493 9.68126 6.9096 21.5995 29.571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.7641 10.8888 8.9043 15.3767 5.51164

CAGE analysis