Hb_009778_060

Information

Type -
Description -
Location Contig9778: 62710-66430
Sequence    

Annotation

kegg
ID rcu:RCOM_0685900
description ATP binding protein, putative (EC:2.7.1.74)
nr
ID XP_012075781.1
description PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
swissprot
ID P48769
description Deoxycytidine kinase OS=Rattus norvegicus GN=Dck PE=2 SV=1
trembl
ID B9SLE3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0685900 PE=4 SV=1
Gene Ontology
ID GO:0005524
description deoxycytidine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64229: 62716-66389
cDNA
(Sanger)
(ID:Location)		 007_B09.ab1: 65718-66389 , 053_M05.ab1: 65718-66389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009778_060 0.0 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
2 Hb_000482_040 0.0675581058 - - Protein YME1, putative [Ricinus communis]
3 Hb_001214_050 0.0786351591 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
4 Hb_001195_450 0.0837537141 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
5 Hb_001723_060 0.0848855147 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
6 Hb_002374_250 0.0851663499 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000635_060 0.0898432145 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
8 Hb_000130_220 0.0919215722 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
9 Hb_001138_060 0.09243713 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
10 Hb_002078_340 0.0943897014 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_001163_060 0.0946414778 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_005511_140 0.0947925827 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
13 Hb_002686_090 0.0966546678 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
14 Hb_032717_060 0.0987113898 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ18 isoform X1 [Jatropha curcas]
15 Hb_000282_080 0.1005332682 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002762_110 0.1005554372 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000340_150 0.1034426933 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
18 Hb_000504_180 0.1072278527 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_001449_070 0.1072847695 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000077_150 0.1077705271 - - PREDICTED: riboflavin synthase [Jatropha curcas]

Gene co-expression network

sample Hb_009778_060 Hb_009778_060 Hb_000482_040 Hb_000482_040 Hb_009778_060--Hb_000482_040 Hb_001214_050 Hb_001214_050 Hb_009778_060--Hb_001214_050 Hb_001195_450 Hb_001195_450 Hb_009778_060--Hb_001195_450 Hb_001723_060 Hb_001723_060 Hb_009778_060--Hb_001723_060 Hb_002374_250 Hb_002374_250 Hb_009778_060--Hb_002374_250 Hb_000635_060 Hb_000635_060 Hb_009778_060--Hb_000635_060 Hb_002686_090 Hb_002686_090 Hb_000482_040--Hb_002686_090 Hb_000482_040--Hb_000635_060 Hb_002078_340 Hb_002078_340 Hb_000482_040--Hb_002078_340 Hb_005116_050 Hb_005116_050 Hb_000482_040--Hb_005116_050 Hb_001163_060 Hb_001163_060 Hb_000482_040--Hb_001163_060 Hb_002762_110 Hb_002762_110 Hb_001214_050--Hb_002762_110 Hb_000077_150 Hb_000077_150 Hb_001214_050--Hb_000077_150 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_001195_450--Hb_001723_060 Hb_001195_450--Hb_002762_110 Hb_005511_140 Hb_005511_140 Hb_001195_450--Hb_005511_140 Hb_012150_030 Hb_012150_030 Hb_001195_450--Hb_012150_030 Hb_000282_080 Hb_000282_080 Hb_001195_450--Hb_000282_080 Hb_001723_060--Hb_002762_110 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001723_060--Hb_000482_040 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_000676_200 Hb_000676_200 Hb_002374_250--Hb_000676_200 Hb_003089_020 Hb_003089_020 Hb_002374_250--Hb_003089_020 Hb_030131_030 Hb_030131_030 Hb_002374_250--Hb_030131_030 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_002539_070 Hb_002539_070 Hb_000635_060--Hb_002539_070 Hb_001716_040 Hb_001716_040 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_000635_060--Hb_002686_090 Hb_000504_180 Hb_000504_180 Hb_000635_060--Hb_000504_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.40295 14.6371 14.3406 12.9262 6.71395 9.98159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.372 16.1254 17.05 13.8049 39.4631

CAGE analysis